Pairwise Alignments

Query, 459 a.a., UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase from Serratia liquefaciens MT49

Subject, 479 a.a., UDP-N-acetylmuramate (RefSeq) from Shewanella loihica PV-4

 Score =  570 bits (1468), Expect = e-167
 Identities = 278/456 (60%), Positives = 341/456 (74%), Gaps = 8/456 (1%)

Query: 1   MRIHILGICGTFMGGLAVLARSLGHEVTGSDANVYPPMSTLLEKEGIDLIQGYDPAQL-- 58
           M +HILGICGTFMGGLA+LAR+ GH+VTGSDANVYPPMST LE++GI+LIQG+DP+QL  
Sbjct: 20  MHVHILGICGTFMGGLALLARANGHKVTGSDANVYPPMSTQLEEQGIELIQGFDPSQLGQ 79

Query: 59  --DPAPDLVIIGNAMTRGNPCVEAVLEQGIPYVSGPQWLHDYVLRDRWVLAVAGTHGKTT 116
             D APDLV+IGNAM+RGNPCVEAVL +G+ Y SGPQ+L +++L +RWVLAV+GTHGKT+
Sbjct: 80  NEDDAPDLVVIGNAMSRGNPCVEAVLNRGLKYTSGPQFLAEHILTNRWVLAVSGTHGKTS 139

Query: 117 TAGMATWILEACGYQPGFVIGGVPGNFDVSARLGGSPFFVIEADEYDCAFFDKRSKFVHY 176
           T+ M  WILE CGY PGF+IGGVP NF VSARLG SPFFV+EADEYD AFFDKRSKFVHY
Sbjct: 140 TSSMLAWILEDCGYAPGFLIGGVPQNFGVSARLGDSPFFVVEADEYDSAFFDKRSKFVHY 199

Query: 177 SPRTLIMNNLEFDHADIFDDLKAIQKQFHHLVRLVPGKGKIILPDNDNHLKQVMAMGCWS 236
            PRTL++NNLEFDHADIFDDLKAIQ+QF+H++R VPG+GK+I P   + +++V+ MGCWS
Sbjct: 200 QPRTLVINNLEFDHADIFDDLKAIQRQFNHVIRTVPGQGKVIWPSASDAVREVIDMGCWS 259

Query: 237 EQE---LVGEEGAWRAQKLTPDASHYAVFLDGEQVGEVKWSLVGEHNMHNGLMAIAATRH 293
           EQE   L+     W ++ L+ D   + +F DGE  G + WSL+G+HN+ N  MAIAA RH
Sbjct: 260 EQETYNLMAGSPGWYSELLSEDGHSFELFFDGESQGVLDWSLIGQHNVENATMAIAAARH 319

Query: 294 VGVLPADACRALGEFINARRRLELRGEAHGVTVYDDFAHHPTAILATLAALRGKVGGTAR 353
           VGV PA A  AL  F   +RR+EL G  + + VYDDFAHHPTAI  TL   R KV G  R
Sbjct: 320 VGVKPAAAIEALTRFAPPKRRMELIGTVNDIAVYDDFAHHPTAIATTLQGCRAKV-GEGR 378

Query: 354 ILAVLEPRSNTMKMGISKNDLAPSLGRADEVFLFQPHHIPWQVAEVAEACVQPAHWSADL 413
           I+ VLEPRSNTMK G+ K+ LA S+  AD  +L+Q  +I W V         P      +
Sbjct: 379 IIVVLEPRSNTMKRGVHKDTLAGSMALADAAYLYQADNIDWDVEAAMAKAELPVTVLYQI 438

Query: 414 DTLVDMIVKTAQPGDHILVMSNGGFGGIHDRLLEAL 449
           D L D +   A+PGD I+VMSNGGFGG+H +LL  L
Sbjct: 439 DELADSVTAAARPGDTIIVMSNGGFGGLHGKLLAKL 474