Pairwise Alignments

Query, 295 a.a., sn-glycerol-3-phosphate ABC transporter permease UgpA from Serratia liquefaciens MT49

Subject, 294 a.a., glycerol-3-phosphate transporter permease from Herbaspirillum seropedicae SmR1

 Score =  229 bits (583), Expect = 7e-65
 Identities = 123/284 (43%), Positives = 173/284 (60%), Gaps = 2/284 (0%)

Query: 5   RPGFGCSWLPYVLVLPQLLITAIFFLWPAGEALWYSVQSLDPFGLSSQFVGLDNFTQLFH 64
           RP F   W P +L  PQ+LI  +FFLWPA +A+ +S   + PFG  S+FVGLDN+ ++  
Sbjct: 4   RPAFPTRWFPLLLATPQMLIVFLFFLWPAVKAIAWSFYLVRPFGNGSRFVGLDNYLRILT 63

Query: 65  DPYYLDSFYTTLIFSFLVAGIGLVVSLFFAALVDYVLRGSRIYQTLMILPYAVAPAVAAV 124
           D  +  S   TL+F+     + + ++L  AA ++  +R  R+ +++ I PYAVA  V  +
Sbjct: 64  DDSFYASLRATLVFTAGSTLLAVTIALALAACLELDVRAKRLLRSIFIWPYAVAGVVVGI 123

Query: 125 LWIFLFNPGLGLITHFLNGLGYS-WNHAQNSGQAMFLVVLASVWQQISYNFLFFLAALQS 183
           +   L NP  GL+  FLN L    W       QAM  ++ A  W Q+  NF+ F AALQ 
Sbjct: 124 VLKVLINPVTGLLA-FLNQLWPGVWAPHLIGAQAMLALIAAFAWTQVPLNFILFSAALQR 182

Query: 184 IPRSLVEAAAIDGAGPVRRFFNLVLPLITPVSFFLLVVNLVYAFFDTFPVIDAATGGGPV 243
           IP  L+ AAAIDGAGP RRF ++ LP+I P      V+N++ AF   F ++DA T GGP 
Sbjct: 183 IPADLMGAAAIDGAGPWRRFIDIQLPMIAPALLLAGVINVIEAFTHGFGLVDALTQGGPG 242

Query: 244 QSTTTLIYKIYREGFAGLDLSSSAAQSVILMLLVIGLTVIQFRF 287
           +ST  L Y+IY +GF GLDLS S+A SV+LML ++ LT++Q RF
Sbjct: 243 RSTAILAYQIYSDGFIGLDLSGSSALSVVLMLFIVALTLLQLRF 286