Pairwise Alignments

Query, 517 a.a., TrkA, Potassium channel-family protein from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 558 a.a., transporter from Vibrio cholerae E7946 ATCC 55056

 Score =  680 bits (1754), Expect = 0.0
 Identities = 334/516 (64%), Positives = 426/516 (82%), Gaps = 7/516 (1%)

Query: 1   VVSLLLGQQHFSINTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGSAL 60
           + SL++G   FS   +AL +GFMLFI+CVG+EAGPNFF IFFRDGK+YL+L+LV++ +A 
Sbjct: 45  ITSLIMGHLGFSFTPEALTIGFMLFIYCVGIEAGPNFFGIFFRDGKHYLILSLVVLITAT 104

Query: 61  LIALGLGKLFGWDIGLTAGMLAGSMTSTPVLVGAGDTLRHSGIAST----QLSSALDNLS 116
            IA   G     D GL AGM+AG++TSTPVLVGA D L +SG+A+      LS  LDN+S
Sbjct: 105 WIAYFGGYYLNLDYGLAAGMMAGALTSTPVLVGAQDAL-NSGLAAVPRHMDLSLILDNVS 163

Query: 117 LGYALTYLIGLVSLIVGARYLPKLQHQDLQTSAQQIARERGLDTDANRKVYLPVIRAYRV 176
           +GYA+ YLIGL+S+I+ A+ LPKLQ Q+L  SAQQIA+ERGL +   RKVYLP+IRAYRV
Sbjct: 164 VGYAMAYLIGLISMIMFAKLLPKLQKQNLSDSAQQIAQERGLGSQ--RKVYLPIIRAYRV 221

Query: 177 GPELVAWTDGKNLRELGIYRQTGCYIERIRRNGILANPDGDAVLQMGDEIALVGYPDAHA 236
           GPEL+ W DG+NLRELGIYRQTGCYIERIRR+GILA+PDGDA+LQ GDEIALVG+PD+HA
Sbjct: 222 GPELINWIDGRNLRELGIYRQTGCYIERIRRHGILAHPDGDAILQEGDEIALVGFPDSHA 281

Query: 237 RLDPSFRNGKEVFDRDLLDMRIVTEEIVVKNHNAVGRRLAQLKLTDHGCFLNRVIRSQIE 296
           RLDPSFRNGKEVFDR+LLD+RI  EEIVVK+ +  G+RL+ L L+++GCFLNRV+R+QIE
Sbjct: 282 RLDPSFRNGKEVFDRNLLDLRISEEEIVVKSDSIAGKRLSDLNLSEYGCFLNRVVRAQIE 341

Query: 297 MPIDDNVVLNKGDVLQVSGDARRVKTIADRIGFISIHSQVTDLLAFCAFFIIGLMIGMIT 356
           MP+D ++VL KGDVLQVSG+  +VK +AD+IGFIS+HSQ+ DLLAFC+FFI+G++ G++T
Sbjct: 342 MPMDLDIVLAKGDVLQVSGEKSKVKGLADKIGFISVHSQMADLLAFCSFFILGILFGLVT 401

Query: 357 FQFSNFSFGIGNAAGLLFAGIMLGFLRANHPTFGYIPQGALNMVKEFGLMVFMAGVGLSA 416
             F   SF +GNA GLL +GI LGFLRANHPTFGY+PQGALNMVK+ GL +FM G+GL+A
Sbjct: 402 MTFGQVSFSLGNAVGLLLSGITLGFLRANHPTFGYVPQGALNMVKDLGLAIFMVGIGLNA 461

Query: 417 GSGISNGLGAVGGQMLIAGLVVSLVPVVICFLFGAYVLRMNRALLFGAMMGARTCAPAME 476
           GS +   L  VG Q++    +VS+VPVV  +L GAY+L+MNRALLFGA++GARTCAPAM+
Sbjct: 462 GSKMFQHLSEVGVQVIGLAFLVSVVPVVFAYLVGAYILKMNRALLFGAIIGARTCAPAMD 521

Query: 477 IISDTARSNIPALGYAGTYAIANVLLTLAGTLIVII 512
           ++++ A+S IPALGYAGTYAIAN+L+TL GT+ +++
Sbjct: 522 VVNEYAKSTIPALGYAGTYAIANILMTLTGTIFILL 557



 Score = 58.5 bits (140), Expect = 6e-13
 Identities = 51/186 (27%), Positives = 74/186 (39%), Gaps = 30/186 (16%)

Query: 339 LLAFCAFFIIGLMIGMITFQFSNFSFGIGNAAGLLFAGIMLGFLRANHPTFGYIPQGALN 398
           +L       IGL  G I F     SF +GN+ G+L   +++G     H  F + P+    
Sbjct: 14  ILLIFVVLAIGLSFGKIRFG----SFQLGNSIGVLITSLIMG-----HLGFSFTPEAL-- 62

Query: 399 MVKEFGLMVFMAGVGLSAGSGISNGLGAVGGQMLIAGLVVSLVPVVICFLFGAYVLRMNR 458
                G M+F+  VG+ AG          G   LI  LVV +    I + FG Y L ++ 
Sbjct: 63  ---TIGFMLFIYCVGIEAGPNFFGIFFRDGKHYLILSLVVLITATWIAY-FGGYYLNLDY 118

Query: 459 ALLFGAMMGARTCAPAMEIISDTARSNIPA---------------LGYAGTYAIANVLLT 503
            L  G M GA T  P +    D   S + A               +GYA  Y I  + + 
Sbjct: 119 GLAAGMMAGALTSTPVLVGAQDALNSGLAAVPRHMDLSLILDNVSVGYAMAYLIGLISMI 178

Query: 504 LAGTLI 509
           +   L+
Sbjct: 179 MFAKLL 184