Pairwise Alignments

Query, 306 a.a., L,D-transpeptidase YbiS from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 323 a.a., ErfK/YbiS/YcfS/YnhG family protein from Pseudomonas fluorescens FW300-N2E2

 Score =  209 bits (532), Expect = 7e-59
 Identities = 125/305 (40%), Positives = 167/305 (54%), Gaps = 19/305 (6%)

Query: 8   LFAAAFAVVGFCKTASAVTYPLPTDGSRLIGQNQVITVPEGNTQPLEYFAAEYQMGLSNM 67
           L  AA  + G     +A+  PLP  G  ++GQ QVI     +T         Y +G S M
Sbjct: 12  LSLAALCMAGH---VAALELPLPPPGEDIVGQVQVIKAKYEDT--FADLGTTYDLGYSEM 66

Query: 68  LEANPGVDTFLPKGGTVLNIPQQLILPDTVHEGIIINSAEMRLYYYPKGTNTVIVLPIGI 127
           + ANPGVD +LP  GT + +P + ILP    EGI+IN AE RLYY+PKG N V   P+GI
Sbjct: 67  VAANPGVDPWLPGAGTEIVLPTRFILPPGPREGIVINLAEYRLYYFPKGRNVVYTFPLGI 126

Query: 128 GQLGKDTPINWTTKVERKKAGPTWTPTAKMHAEYRAAGEPLPAVVPAGPDNPMGLYALYI 187
           G+ G  +PI  T+ +  K   PTWTP A + AE+ A G+PLP VVPAGPDNP+G +   +
Sbjct: 127 GREGWGSPIAHTS-IIAKTPNPTWTPPASIKAEHAADGDPLPNVVPAGPDNPLGPFKFTL 185

Query: 188 GRL-YAIHGTNANFGIGLRVSHGCVRLRNDDIKFLFENVPVGTRVQFIDEPVKATTEPDG 246
           G   Y IHG+N  FGIG+R SHGC R+ N+++  +   VPVGT V+ I++P K      G
Sbjct: 186 GTPGYLIHGSNKKFGIGMRTSHGCFRMFNNNVLEMAGMVPVGTSVRIINDPYKLGLS-GG 244

Query: 247 SRYIEVHNPLSTTEAQFEGKEAVPITLNKSILAVTNEPDVDQT------VVQQAVQDRSG 300
             Y+E H PL       +G  +V       I A+    D+         VV+  V    G
Sbjct: 245 KVYLEAHTPLDD-----KGNPSVVDKHTSVINAMLKREDITSNLRMNWDVVRDVVAAEDG 299

Query: 301 MPVRL 305
           MPV +
Sbjct: 300 MPVEI 304