Pairwise Alignments

Query, 306 a.a., L,D-transpeptidase YbiS from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 304 a.a., ErfK/YbiS/YcfS/YnhG (RefSeq) from Shewanella amazonensis SB2B

 Score =  381 bits (979), Expect = e-110
 Identities = 182/294 (61%), Positives = 228/294 (77%), Gaps = 1/294 (0%)

Query: 13  FAVVGFCKTASAVTYPLPTDGSRLIGQNQVITVPEGNTQPLEYFAAEYQMGLSNMLEANP 72
           F+++ FC++A AV YPLP   SRL+G+NQ   VP+ + + LE  AA++Q+GLSN++EANP
Sbjct: 11  FSLISFCQSALAVIYPLPAKDSRLVGENQYYVVPD-DKRTLEDIAAQFQLGLSNLMEANP 69

Query: 73  GVDTFLPKGGTVLNIPQQLILPDTVHEGIIINSAEMRLYYYPKGTNTVIVLPIGIGQLGK 132
           GVD FLPK G+ L IP QLILPD   EGI+IN AEMRLYYYPKG   V VLPIGIGQ+G+
Sbjct: 70  GVDPFLPKPGSTLIIPHQLILPDAPREGIVINIAEMRLYYYPKGKKIVEVLPIGIGQVGR 129

Query: 133 DTPINWTTKVERKKAGPTWTPTAKMHAEYRAAGEPLPAVVPAGPDNPMGLYALYIGRLYA 192
           DTP NW T V+RK+A PTWTPTA++  EY A G  LP V PAGPDNPMGL+ALYIG LYA
Sbjct: 130 DTPENWVTTVQRKRANPTWTPTARIRKEYAAKGVTLPPVWPAGPDNPMGLFALYIGNLYA 189

Query: 193 IHGTNANFGIGLRVSHGCVRLRNDDIKFLFENVPVGTRVQFIDEPVKATTEPDGSRYIEV 252
           IHGTNA FGIGLRVS GCVRLR+ DI+ LF +VPVGTRVQF+++P+KAT EPDG+RY+EV
Sbjct: 190 IHGTNATFGIGLRVSQGCVRLRDTDIEHLFNSVPVGTRVQFVNQPIKATEEPDGARYLEV 249

Query: 253 HNPLSTTEAQFEGKEAVPITLNKSILAVTNEPDVDQTVVQQAVQDRSGMPVRLN 306
           H PLS T+A+F+  E VP+TL  +I       + D  V+++ ++ R+GMP R+N
Sbjct: 250 HQPLSRTQAEFDSAEPVPLTLPTAISRFVAHAETDSFVLKRLLEARTGMPTRIN 303