Pairwise Alignments

Query, 306 a.a., L,D-transpeptidase YbiS from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 304 a.a., ErfK/YbiS/YcfS/YnhG family protein (RefSeq) from Shewanella sp. ANA-3

 Score =  378 bits (970), Expect = e-109
 Identities = 191/306 (62%), Positives = 229/306 (74%), Gaps = 3/306 (0%)

Query: 1   MNMKLTTLFAAAFAVVGFCKTASAVTYPLPTDGSRLIGQNQVITVPEGNTQPLEYFAAEY 60
           M+M  TT  A    +V    +A A  YPLP+  SRL+G+N   TVPEG    LE  AA++
Sbjct: 1   MSMLRTT--ALLLTLVFPSLSALATEYPLPSSKSRLVGENLYYTVPEGK-HTLEDIAAKF 57

Query: 61  QMGLSNMLEANPGVDTFLPKGGTVLNIPQQLILPDTVHEGIIINSAEMRLYYYPKGTNTV 120
           Q+GLSN+LEANPGVD FLP  G+ L IPQQLILP+   EGI+IN AEMRLYYYPKG NTV
Sbjct: 58  QLGLSNLLEANPGVDPFLPTPGSKLLIPQQLILPNAPREGIVINVAEMRLYYYPKGKNTV 117

Query: 121 IVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAEYRAAGEPLPAVVPAGPDNPM 180
            VLPIGIGQ+GKDTP NW T V+RK+A PTWTPT ++  EY A GE LPAV PAGPDNPM
Sbjct: 118 EVLPIGIGQIGKDTPENWVTSVQRKRANPTWTPTPRIRKEYAARGEILPAVWPAGPDNPM 177

Query: 181 GLYALYIGRLYAIHGTNANFGIGLRVSHGCVRLRNDDIKFLFENVPVGTRVQFIDEPVKA 240
           GLYALYIG LYAIHGTNA+FGIGLRVS GCVRLR+DDI+ LF+ VPVGTRVQF+++P+KA
Sbjct: 178 GLYALYIGNLYAIHGTNASFGIGLRVSQGCVRLRHDDIEHLFKTVPVGTRVQFVNQPIKA 237

Query: 241 TTEPDGSRYIEVHNPLSTTEAQFEGKEAVPITLNKSILAVTNEPDVDQTVVQQAVQDRSG 300
           T EPDG RY+ VH PLS T A+FE  E V +TL K I     + D D  V+++ + +R+G
Sbjct: 238 TEEPDGKRYLAVHQPLSRTIAEFESAEPVSLTLPKEIAKFIAKADTDSAVIKKLLDERTG 297

Query: 301 MPVRLN 306
           +P  +N
Sbjct: 298 VPTIIN 303