Pairwise Alignments

Query, 454 a.a., ATP-dependent RNA helicase RhlE from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 444 a.a., DEAD/DEAH box helicase from Pseudomonas fluorescens SBW25-INTG

 Score =  425 bits (1092), Expect = e-123
 Identities = 226/414 (54%), Positives = 294/414 (71%), Gaps = 11/414 (2%)

Query: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
           M+F +LGL   +LRA+   GY+ PTP+Q QAIPAVL GRDLMA+AQTGTGKTAGF +PLL
Sbjct: 1   MTFATLGLIEPLLRALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFAVPLL 60

Query: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120
           Q L T  P        RALIL PTRELA Q+  +V +Y+++L + +  V+GGVSINPQMM
Sbjct: 61  QLLTTEGPKVAANS-ARALILCPTRELAEQVHASVAEYAQHLPLTTYAVYGGVSINPQMM 119

Query: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180
           KLR GVD+LVATPGRL+DL  QNA+KL+Q++ LVLDEADRMLD+GF  ++  +   LP K
Sbjct: 120 KLRKGVDILVATPGRLIDLFRQNALKLNQLQTLVLDEADRMLDLGFSEELANIYRMLPKK 179

Query: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMI 240
           RQ LLFSATFSD+I+ LA ++L +PL IEV+ RN A+  V Q V  VDKKRK EL   ++
Sbjct: 180 RQTLLFSATFSDEIRLLAGQMLNDPLTIEVSPRNVAANTVKQWVVPVDKKRKPELFVHLM 239

Query: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300
            +G W+QVLVF +T++G + L ++L   GI +  IHG+K Q  R RAL  FKS ++++LV
Sbjct: 240 RKGRWKQVLVFAKTRNGVDALVDKLQGLGINADGIHGDKPQATRQRALDRFKSSEVQILV 299

Query: 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360
           ATD+AARGLDIE+LP VVN++LP V EDY+HRIGRTGRA  TGEA+SLVC DE  +L  I
Sbjct: 300 ATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVNMLSAI 359

Query: 361 EKLLKKEIPRITTPGYE-----PDPSIKAEPIQNGRQQR-----GGGGGRGRGQ 404
           E L ++ + R   P +E     PD     + ++  ++ +     GGGG R  G+
Sbjct: 360 EMLTRQTLTRKMEPDFEPEHRVPDTDASGQVVKKPKKPKKPKTSGGGGKRNLGK 413