Pairwise Alignments

Query, 454 a.a., ATP-dependent RNA helicase RhlE from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 432 a.a., DEAD/DEAH box helicase from Pedobacter sp. GW460-11-11-14-LB5

 Score =  427 bits (1099), Expect = e-124
 Identities = 225/431 (52%), Positives = 297/431 (68%), Gaps = 10/431 (2%)

Query: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
           M F  L L   IL+A+  +GY +PTPIQ+Q+IP +L+G+DL+  AQTGTGKTA F +P+L
Sbjct: 1   MLFKELNLIEPILKALETEGYTQPTPIQEQSIPTILKGKDLLGCAQTGTGKTAAFAIPML 60

Query: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120
           Q L     + K  + ++ALILTPTRELA QI E+ + Y ++LN+R LV+FGGV+ + Q+ 
Sbjct: 61  QLLHEKHINTKATKNIKALILTPTRELAIQIEESFKAYGRHLNLRHLVIFGGVNQHSQVE 120

Query: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180
            LR GVD+LVATPGRLLDL +Q  + L+ IE+ VLDEADRMLDMGFIHD++RV+AKLPAK
Sbjct: 121 ALRKGVDILVATPGRLLDLMNQGFISLNTIELFVLDEADRMLDMGFIHDVKRVVAKLPAK 180

Query: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMI 240
           RQ L FSAT  D+I+ LA  +L +P ++EV   ++ +E + Q V+FVDK  K++LL  ++
Sbjct: 181 RQTLFFSATMPDEIQKLANTILSSPTKVEVTPISSTAETIVQSVYFVDKPDKKKLLIHLL 240

Query: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300
              N Q  LVFTRTKHGA+ + + L   GI++AAIHGNKSQ AR RAL DFK   IRVLV
Sbjct: 241 EDKNIQTALVFTRTKHGADRIVKDLAHAGIKAAAIHGNKSQNARQRALTDFKDRKIRVLV 300

Query: 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360
           ATDIAARG+DI++L HV N+ELPN+PE YVHRIGRTGRA A G A+S    +E++ L DI
Sbjct: 301 ATDIAARGIDIDQLSHVFNFELPNIPESYVHRIGRTGRAGANGIAISFCDAEENEYLLDI 360

Query: 361 EKLLKKEIPRITTPGYE-------PDPSIKAEPIQNGRQQRGGGGGRGRGQNQGGAGRSQ 413
           +KL+K  +P +    Y            +K +P     Q +GGGG +G   N  G  R+ 
Sbjct: 361 QKLIKITLPIVDDHPYPLSWESMLAKNQVKRKP---QAQSKGGGGKKGGDGNMSGKPRNA 417

Query: 414 QPRRQDSGAAK 424
              R+  G  K
Sbjct: 418 SNNRRFGGNRK 428