Pairwise Alignments

Query, 454 a.a., ATP-dependent RNA helicase RhlE from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 520 a.a., RNA helicase from Herbaspirillum seropedicae SmR1

 Score =  531 bits (1368), Expect = e-155
 Identities = 278/458 (60%), Positives = 333/458 (72%), Gaps = 17/458 (3%)

Query: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
           MSF +LGL+ +I+RA++EQGY  PTPIQ QA+PAVL G DL+A AQTGTGKTAGFTLPLL
Sbjct: 1   MSFSALGLSDEIVRAVSEQGYTSPTPIQAQAVPAVLSGGDLLAGAQTGTGKTAGFTLPLL 60

Query: 61  QHLITHQPHAK--GRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQ 118
           Q L +  P  K  G  P+RALIL PTRELAAQ+ E+VR Y KYL + S  +FGGV INPQ
Sbjct: 61  QRL-SAMPRQKINGHVPIRALILAPTRELAAQVEESVRQYGKYLPLTSACIFGGVGINPQ 119

Query: 119 MMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLP 178
           +  L+ GVD+LVATPGRLLD   Q  V L  I+ILVLDEADRMLDMGFI DIR+VLA LP
Sbjct: 120 ITLLKRGVDILVATPGRLLDHMQQGTVNLQHIQILVLDEADRMLDMGFIRDIRKVLAALP 179

Query: 179 AKRQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQ 238
            KRQNLLFSATF+D+IK LA+ LL NP  IEVARRN+  E + Q +H VD+ +K  +L+ 
Sbjct: 180 PKRQNLLFSATFADEIKKLADSLLNNPALIEVARRNSTVEVIAQKIHPVDRDKKHPMLAH 239

Query: 239 MIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRV 298
           +I    W+QVLVFTRTKHGAN L EQL +DGI + AIHGNKSQ ART+ALA+FK G +  
Sbjct: 240 LIKTHQWKQVLVFTRTKHGANKLVEQLGRDGITAMAIHGNKSQSARTKALAEFKDGKLTA 299

Query: 299 LVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLR 358
           L+ATDIAARG+DI++LPHVVNY+LPNVPEDYVHRIGRTGRA ATGEA+SLVC+DE  LL 
Sbjct: 300 LIATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCIDERDLLH 359

Query: 359 DIEKLLKKEIPRITTPGYEPDPSIKAEPIQ----NGRQQRGGGGGRGR---------GQN 405
           DIE+ +K+EIP     G+EPDP+ K +PIQ     GR Q GGG G  R         G  
Sbjct: 360 DIERFIKREIPVEVIAGFEPDPTAKPQPIQLRSGQGRHQNGGGRGGQRSAPRKPAANGNG 419

Query: 406 QGGAGRSQQPRRQDSGAAKAKPKP-RTGEGKTAGDKAR 442
              A +  +P    +G   AKP+P   G G   G + +
Sbjct: 420 NAAAAKPAKPANGGNGGQPAKPRPAANGNGNGNGGRGQ 457