Pairwise Alignments

Query, 368 a.a., ABC transport system, permease component YbhR from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 388 a.a., ABC transporter permease from Rhodanobacter denitrificans FW104-10B01

 Score =  160 bits (404), Expect = 7e-44
 Identities = 103/365 (28%), Positives = 184/365 (50%), Gaps = 10/365 (2%)

Query: 4   RLWTLIRKELQSLLREPQTRAILILPVLIQVILFPFAATLEVTNATIAIYNEDNGKHSVE 63
           RL  L+ KE    LR+P T  I  +  ++ ++LF +A +L+  N  I +  E  G  +  
Sbjct: 24  RLMALVVKESHQALRDPSTLLIAFVLPVVLLLLFAYAVSLDAKNVRIGVVLESPGASAQS 83

Query: 64  LTQRFARAKAFTHVLLLNSPQEIQPTIDTQKALLLVRFPADFSRNLDTFQPAPM-QLILD 122
           L   F+  + F  V   +  +E+   + +      V  P DF + L      P+ Q+I D
Sbjct: 84  LAAAFSGTR-FLDVHFAHDRREVADQLVSGALRGYVVIPQDFEQRLARRGSEPLVQIITD 142

Query: 123 GRNSNSAQIAANYLQQIVKEYQQTLMDGKPKPNNSELVV-RNWYNPNLDYKWFVVPSLIA 181
           G   N+A    NY + +V+ ++     G   P  + ++  R W+NP L+ +  ++P  IA
Sbjct: 143 GSYPNTANYVENYARGVVQSWRAGR--GAAAPQQAVMLEPRYWFNPELESRRALIPGAIA 200

Query: 182 MITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTWQIFVGKAVPALIVATFQATIVLAIG 241
           ++ TI   ++T+L VARE E+GT++ +L +P +  +I +GK +P  ++         A+ 
Sbjct: 201 IVMTIIGTMLTALVVAREWERGTMEAVLSTPASVAEILIGKLLPYFVLGMLSTLGAAALA 260

Query: 242 IWAYQIPFAGSLALFYFTMVIYGLSLVGFGLLISSLCATQ-QQAFIGVFVFMMPAILLSG 300
           ++ + +P  GSLA       ++ +  +G GLLISSL   Q   A I +F   +PA +LSG
Sbjct: 261 VFVFGVPLHGSLAALLLLSAVFMVPALGQGLLISSLARNQFLAAQIALFTGFLPAFMLSG 320

Query: 301 YVSPVENMPVWLQNLTWINPIRHFTDITKQIYLKDASLGIVWGSLWPLLVIAATTGSAAY 360
           ++  ++ MP  ++ +T + P R+F +  K ++L     G +W    P L+  A  G   +
Sbjct: 321 FLYEIDAMPAPIRAVTHLIPARYFVESLKTVFL----AGDIWAVFVPNLLAMAAIGVVFF 376

Query: 361 AMFRR 365
            + +R
Sbjct: 377 GLAKR 381