Pairwise Alignments

Query, 372 a.a., Macrolide-specific efflux protein MacA from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 405 a.a., HlyD family secretion protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  239 bits (611), Expect = 7e-68
 Identities = 144/386 (37%), Positives = 225/386 (58%), Gaps = 28/386 (7%)

Query: 6   KKFKKRYLVIIL--ILLVGGMAGWRMINAP--LPTYQTLIVRPGDLEQSVLATGKLDALR 61
           KK  KR L++IL  ++L+GG A + +++ P   P+Y T  VR GD+E SVLA G L A +
Sbjct: 2   KKSSKRKLILILSGLILLGGGA-YFLLHKPEAAPSYVTEPVRRGDIENSVLANGMLQASK 60

Query: 62  KVDVGAQVSGQLKTLLVSIGDNVKKDQLLGVIDPDQAENQIKEVEATLMELNAERQQAAA 121
            V VGAQVSGQ+ +L V++G+ VKK  L+  ID    +N ++   A+L  +NA+ +   A
Sbjct: 61  LVSVGAQVSGQILSLSVALGEEVKKGDLIAQIDSLAQQNNLQNALASLKNINAQYRAKQA 120

Query: 122 ELKLARVTLARQQQLAKTQAVSQQDLDTAATEMAVKQARIGTIDAQIKRNRASLDTAKTN 181
           +++ A++   RQQQ+   +A S+ D + A   + V QA +  ++AQ ++   ++D+A+ +
Sbjct: 121 QIRQAKLEYTRQQQMLADKASSRADFEAAEATLTVYQAELEQLEAQKQQAEINVDSARID 180

Query: 182 LEYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLRAG 241
           L YT+I APM G V       GQTV A Q  P I+ +A + TM VKAQ+SEAD++++R G
Sbjct: 181 LGYTKITAPMDGTVVYSAVEVGQTVNANQTTPTIVEMAQLDTMTVKAQISEADIVNVRPG 240

Query: 242 QKAWFTIAGDPQTRYEGVLKDILPTPEKI-----------NDAIFYYARFEVPNPKRILR 290
           Q  +FTI G P   Y G L+ I P P  +           +DAI+Y+  F+V NP R LR
Sbjct: 241 QPVYFTILGRPNHPYRGSLRAIEPGPTSMDGDDSNMSSSDSDAIYYHGLFDVENPDRTLR 300

Query: 291 LDMTAQVYIQLMDVKNVLIIPLAAL--------GEPV----GGNRYKVALLRNGEKRERE 338
           + MTAQ+ I L    + L++P   L          P      G +Y+V +L + + +  +
Sbjct: 301 IGMTAQISIVLAKSDDALLVPSQVLKVKPKDKAASPAERKSRGPQYQVPVLVDNQVQYVD 360

Query: 339 VVIGERNDTDVEVVKGLEAGDEVIIG 364
           V +G  N  + E++ GL+ GD+V++G
Sbjct: 361 VTVGINNKINAEILSGLKEGDQVVLG 386