Pairwise Alignments

Query, 372 a.a., Macrolide-specific efflux protein MacA from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 396 a.a., membrane protein from Herbaspirillum seropedicae SmR1

 Score =  175 bits (444), Expect = 2e-48
 Identities = 118/362 (32%), Positives = 192/362 (53%), Gaps = 14/362 (3%)

Query: 14  VIILILLVGGMAGWRMINAPLPT-------YQTLIVRPGDLEQSVLATGKLDALRKVDVG 66
           V ++I+L GG   +     P P         +T+ V   DLEQ V ATG + A   VDVG
Sbjct: 33  VALVIVLGGGYWLYSRQQPPPPAPKPIPVKLETVTVERADLEQVVNATGNVVAQDYVDVG 92

Query: 67  AQVSGQLKTLLVSIGDNVKKDQLLGVIDPDQAENQIKEVEATLMELNAERQQAAAELKLA 126
           ++V+GQ+  + V +G+ VK  +LL  + P    ++I+   ATL  L AE     A+L  A
Sbjct: 93  SKVAGQISDVDVVVGETVKAGKLLATVAPAVQSSRIENNRATLARLKAELAGQNAQLDFA 152

Query: 127 RVTLARQQQLAKTQAVSQQDLDTAATEMAVKQARIGTIDAQIKRNRASLDTAKTNLEYTR 186
           ++   RQ QL    A  ++  +++   M    AR+   +AQI++  A++   +   + TR
Sbjct: 153 QLQFQRQTQLKAENATREESYESSRMNMYAAAARVDATNAQIQQTEAAIREDEAVQKQTR 212

Query: 187 IVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLRAGQKAWF 246
           I AP++G +  +    GQ V A Q+A  ++ +AD+S M V+  V+E DV  L+ G  A+F
Sbjct: 213 IEAPVSGTIVTLNARPGQMVAANQEA--LMRIADLSRMTVQVPVAEEDVTRLQKGMTAYF 270

Query: 247 TIAGDPQTRYEGVLKDI--LPTPE--KINDAIFYYARFEVPNPKRILRLDMTAQVYIQLM 302
           T  G P  R+ G L+ I  LPT +  +     FY   F+V NP R L   M+A VY  L 
Sbjct: 271 TTPGYPGKRWSGKLRQIMLLPTDDSGRQGKKAFYTVFFDVANPSRELMSGMSADVYFVLA 330

Query: 303 DVKNVLIIPLAALGEP-VGGNRYKVALLRNGEKREREVVIGERNDTDVEVVKGLEAGDEV 361
             ++V  IP   + +P + G +    +L +G+   R++ IG R++   +V+ GL+ G++V
Sbjct: 331 RAEHVPTIPRTLVTKPGMDGTQTVKVVLADGKLETRKIKIGIRDNERAQVLSGLKEGEQV 390

Query: 362 II 363
           ++
Sbjct: 391 LL 392