Pairwise Alignments

Query, 372 a.a., Macrolide-specific efflux protein MacA from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 405 a.a., hemolysin secretion protein D from Herbaspirillum seropedicae SmR1

 Score =  249 bits (637), Expect = 7e-71
 Identities = 150/385 (38%), Positives = 216/385 (56%), Gaps = 24/385 (6%)

Query: 10  KRYLVIILILLVGGMAGW--RMINAPL--PTYQTLIVRPGDLEQSVLATGKLDALRKVDV 65
           +R   I L LLV  +A W  R +  P   PTY +   R  D++  VLA+G + A ++V V
Sbjct: 7   RRPKFIFLALLVLLIAAWIIRSVLTPPAPPTYLSATARVADIQDVVLASGTVKAYKQVSV 66

Query: 66  GAQVSGQLKTLLVSIGDNVKKDQLLGVIDPDQAENQIKEVEATLMELNAERQQAAAELKL 125
           GAQVSGQ+K+L V++GD VKK QL+  ID     N +   E +L  L A+ +   A LK 
Sbjct: 67  GAQVSGQIKSLKVALGDQVKKGQLVAEIDSLTQANALASAEFSLQNLQAQLRAKEASLKQ 126

Query: 126 ARVTLARQQQLAKTQAVSQQDLDTAATEMAVKQARIGTIDAQIKRNRASLDTAKTNLEYT 185
           A++  ARQ+ +    A S+++ ++A   +   QA I  + AQIK     +DTA+ NL YT
Sbjct: 127 AQLAYARQKMMLAGDASSRENFESAEATLNTTQADIAALQAQIKDGAIKVDTARLNLGYT 186

Query: 186 RIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLRAGQKAW 245
           RI +P+ G+V  I   +GQTV A Q  P I+ +A M T+ +KAQ+SEADV+ ++ GQ  +
Sbjct: 187 RISSPIEGQVVAIVAQEGQTVNANQSTPTIIKVARMDTVTIKAQISEADVVRVKPGQPVF 246

Query: 246 FTIAGDPQTRYEGVLKDILPTPEKI-------------------NDAIFYYARFEVPNPK 286
           FTI GDP  RY   L+ I P P+ I                   + AI+Y    +VPNP 
Sbjct: 247 FTILGDPDHRYRTTLRAIEPAPDSILQDDTSSSTTSITSSSSASSTAIYYNGLLDVPNPD 306

Query: 287 RILRLDMTAQVYIQLMDVKNVLIIPLAALGEPVGGNRYKVALLRN-GEKREREVVIGERN 345
             LR+ MT QV I L +  N L++P  ALG       Y V +L + G+  ER+V IG   
Sbjct: 307 GKLRISMTTQVNIVLSEASNALVLPSTALGAKAADGSYTVRVLDDQGQAHERKVRIGINT 366

Query: 346 DTDVEVVKGLEAGDEVIIGESRPGA 370
           +  V++V+G++AG+ V+ G   PGA
Sbjct: 367 NALVQIVEGVKAGERVVTGTVLPGA 391