Pairwise Alignments

Query, 372 a.a., Macrolide-specific efflux protein MacA from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 411 a.a., efflux transporter, RND family, MFP subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  145 bits (366), Expect = 2e-39
 Identities = 120/406 (29%), Positives = 195/406 (48%), Gaps = 46/406 (11%)

Query: 9   KKRYLVIILILLVGGMAGW---RMINAPLPTYQTLIVRPGDLEQSVLATG--KLDALRKV 63
           ++ Y ++ LIL    +  W   R   A     +T  V  G++ +++ ATG  K      V
Sbjct: 4   RRMYAILALILCSIAVGVWLYARRGTADPVIRETATVTRGEVRKTLEATGIIKPQVGAVV 63

Query: 64  DVGAQVSGQLKTLLVSIGDNVKKDQLLGVIDPDQAENQIKEVEATLMELNAER------- 116
             G++ +G ++ L V +GD V+KD+++  ID  +   Q+ E EA L +  AE        
Sbjct: 64  KTGSRFTGIIRKLHVKVGDRVEKDEVIAEIDDREQRAQLDEAEAKLRQAEAEAARVETSY 123

Query: 117 -----------QQAAAELKLARVTLARQQQLAKTQAVSQQDLDTAATEMA----VKQARI 161
                      Q A AE + A +T+ R+++L +    ++  LD A         V  AR 
Sbjct: 124 PLQIREAEAQVQAARAESEYAALTMERKRKLVEQDLDARNSLDEAQQRSRSLSNVLVARE 183

Query: 162 GTID-------AQIKRNR-------ASLDTAKTNLEYTRIVAPMAGEVTQITTLQGQTVI 207
            T+D        + KR R       A+L+TA+  L Y  I +P++G V+Q+T  +G+TV+
Sbjct: 184 ATLDRLRNEFRTERKRTRQAAEQAKAALETARIRLSYAVIRSPISGIVSQVTAPEGETVV 243

Query: 208 AAQQAPNILTLADMSTMLVKAQVSEADVIHLRAGQKAWFTIAGDPQTRYEGVLKDILPTP 267
           A  Q  N++T+ D S + +   V E DV  +R G    F +   P+  + GV+  I P P
Sbjct: 244 AGFQVVNLITILDPSRLEMWIYVDETDVGQVRPGLDVEFRVDSQPEKTFRGVVDQIYPQP 303

Query: 268 EKINDAIFYYARFEV-PNPKRILRLDMTAQVYIQLMDVKNVLIIPLAALGEPVGGNRYKV 326
           E  ++ ++Y A   + P     LR +MT Q  I +   K+VL+IP  A+    GG   +V
Sbjct: 304 EIRDNIVYYQALVRLDPATSEHLRPEMTTQCRIIVASKKDVLVIPNDAIKWVDGG---RV 360

Query: 327 ALLRNGEK-REREVVIGERNDTDVEVVKGLEAGDEVIIGESRPGAT 371
             + +G K R  + V+G       EVV+GL  G +V +    PGA+
Sbjct: 361 VFIDDGGKVRRVKPVLGTAGPDVTEVVEGLAEGQKVGVRVELPGAS 406