Pairwise Alignments

Query, 447 a.a., FIG065221: Holliday junction DNA helicase from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 445 a.a., ATPase, AAA family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  578 bits (1489), Expect = e-169
 Identities = 294/447 (65%), Positives = 356/447 (79%), Gaps = 6/447 (1%)

Query: 1   VSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPG 60
           VS+LS +F+ + F+PLAARMRP  +A+YIGQ HLL  G+PL +A+EAG  HSM+LWGPPG
Sbjct: 3   VSSLSFNFAPD-FRPLAARMRPRTIAEYIGQAHLLGEGQPLRQALEAGRAHSMMLWGPPG 61

Query: 61  TGKTTLAEVIARYASADVERISAVTSGVKEIREAIERARQ-NRNAGRRTILFVDEVHRFN 119
           TGKTTLAE+IA Y++A VERISAVTSGVK+IR AIE+A+   ++ G+RT+LFVDEVHRFN
Sbjct: 62  TGKTTLAELIAHYSNAHVERISAVTSGVKDIRGAIEQAQAIAQSRGQRTLLFVDEVHRFN 121

Query: 120 KSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLTTDDIEQVLDQAMQ 179
           KSQQDAFLP IEDGT+ FIGATTENPSFE+N+ALLSRARVYL+K L+ D+I  ++ QA+ 
Sbjct: 122 KSQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSRARVYLIKRLSQDEIVHIITQALA 181

Query: 180 DKTRGYGDQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEADDSGKRVLLPALLTE 239
           D  RG G + + +P +    +A+L +GDAR+ALN LE+M+DM    D G       +L +
Sbjct: 182 DTERGLGQRALNMPTDVLNKLAQLCDGDARKALNLLELMSDMVA--DGG--TFTTEMLVQ 237

Query: 240 IAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIA 299
           +AG + A FD  GD+FYDLISA+HKS+RGSAPDAALYW+ RI+  GGDPLYVARR LAIA
Sbjct: 238 VAGHQVAGFDKNGDQFYDLISAVHKSIRGSAPDAALYWFCRILEGGGDPLYVARRLLAIA 297

Query: 300 SEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALAD 359
           SEDVGNADP AM +A+ AW+CF RVGPAEGERAIAQAIVYLA APKSNAVYTAFKAA A 
Sbjct: 298 SEDVGNADPAAMTIALNAWECFHRVGPAEGERAIAQAIVYLASAPKSNAVYTAFKAARAL 357

Query: 360 ARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYAAGEVYFPPEIAQTRYYHPT 419
           ARE     VP HLRNAPTKLM EMG+G EYRYAHDEPNAYA+GE YFP  + ++++Y PT
Sbjct: 358 ARETGQEAVPYHLRNAPTKLMAEMGFGAEYRYAHDEPNAYASGENYFPESLKESQFYFPT 417

Query: 420 NRGLEGKIGEKLAWLAEQDQNSPTKRY 446
            RG E +I +KL  LA+ DQ S  KRY
Sbjct: 418 ERGFEKRIKDKLVQLAQLDQASGRKRY 444