Pairwise Alignments

Query, 573 a.a., Transport ATP-binding protein CydC from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

 Score =  193 bits (490), Expect = 2e-53
 Identities = 159/578 (27%), Positives = 282/578 (48%), Gaps = 28/578 (4%)

Query: 2   RALLPYLTLYKRHKWMLTLGIAL--AILTLLASIGLLTLSGWFLSASAIAGFAGIYSFNY 59
           + L  Y+ LYK    + T+ + +  A  T + S+    L   F   +A + F  I  F  
Sbjct: 14  KRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGF--GNAESNFLRILPF-M 70

Query: 60  MLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPASLARYQQGEL 119
           +L    VRG  ++  A  Y    VS +    V+  +R   F+  + +      +   G L
Sbjct: 71  ILGLMFVRG--LSGFASSYCLSWVSGN----VVMQMRRRLFNHFMHMPVRFFDQESTGGL 124

Query: 120 LNRIVADVDTLDHLYLRVISPLV--GAFVVIMIVTLGLSVLDVTLA-ITLGGIMLLTLFI 176
           L+RI  D + +     R +  +V  GA ++ ++  +  +   ++L  I +  ++   +  
Sbjct: 125 LSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISF 184

Query: 177 MPPVFYRAGKNTGQNLTHLRGQYRQQLTSWLQGQAELTIFGASKRYRAQMEATELQWHEA 236
           +   F +  +N    + H+     Q L    +G   +  +G  +  R + +       + 
Sbjct: 185 VSKRFRKISRNMQTAMGHVTSSAEQML----KGHKVVLSYGGQEVERKRFDKVSNSMRQQ 240

Query: 237 QRRQSELTALSQALMLLIGALAVMLMLWMAS-GGVGGNTQPGALIALF--VFCALAAFEA 293
             +     +++  ++ +I +LA+  +L++AS   +     PG    +F  +F  +   +A
Sbjct: 241 TMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKA 300

Query: 294 LAPVTGAFQHLGQVIASALRITELTEQKPEVTFPQAETPAPEKVTLTLRDVSFRYPDQPI 353
           L  VT  FQ       +   + +L  ++    + +AE    E   + ++DV+F Y  +  
Sbjct: 301 LTSVTSEFQRGMAACQTLFGLMDLETERDNGKY-EAERVNGE---VDVKDVTFTYQGKEK 356

Query: 354 NALNALSLQANPGEHVAILGRTGCGKSTLLQLLTRAWDPQQGEILLNDLPLSSLSESALR 413
            AL+ +S     G+ VA++GR+G GKST+  L TR +D   G I L+   +     + LR
Sbjct: 357 PALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLR 416

Query: 414 RTISVVPQRVHLFSATLRDNLLLAAPNA-SDEALSDMLRRVGLENLLED--SGLNSWLGE 470
           R  ++V Q VHLF+ T+ +N+  AA    + E +    R+      +E+   GL++ +GE
Sbjct: 417 RHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGE 476

Query: 471 GGRLLSGGELRRLAIARALLHDAPLMLLDEPTEGLDATTESEMLELLADVMREKTVLMVT 530
            G  LSGG+ +R+AIARALL DAP+++LDE T  LD  +E  +   L ++ + KTVL++ 
Sbjct: 477 NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIA 536

Query: 531 HRLRGLARFDQIIVMDDGHIIERGTHAELLAGQGRYYQ 568
           HRL  + + D+I+V+D+G IIERG HA+LLA  G Y Q
Sbjct: 537 HRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQ 574