Pairwise Alignments

Query, 573 a.a., Transport ATP-binding protein CydC from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 595 a.a., ABC transporter, ATP-binding/permease protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  209 bits (532), Expect = 3e-58
 Identities = 143/489 (29%), Positives = 250/489 (51%), Gaps = 15/489 (3%)

Query: 90  RVLQHLRIYTFSKLLPLSPASLARYQQGELLNRIVADVDTLDHLYLRVISPLVGAFVVIM 149
           RV   +R+  +++LL LSPA  A+ + GE+++R  AD   L  +    +S  + + V ++
Sbjct: 98  RVSADIRLAVYNQLLKLSPAFYAKVRTGEVISRFTADSTLLQTVVGSSLSMALRSGVTVI 157

Query: 150 IVTLGLSVLDVT-LAITLGGIMLLTLFIMPPVFY----RAGKNTGQNLTHLRGQYRQQLT 204
               GL+++ +T + +TL  ++ + L + P  F+    R      Q+     G Y  +  
Sbjct: 158 G---GLAMMGITSVKMTLLVLLAVPLVLGPVSFFGRKVRTLARESQDRVADLGAYVDETL 214

Query: 205 SWLQGQAELTIFGASKRYRAQMEATELQWHEAQRRQSELTALSQALMLLIGALAVMLMLW 264
             +     +  +G   + R+           A   +    AL  + ++ +   A+ L+ W
Sbjct: 215 HEIH---TVQAYGHEDKDRSLFNGRVEDVMTAASGRIRYRALLISSVMFLSIAAIALVTW 271

Query: 265 MASGGVGGNTQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASALRITELTEQKPEV 324
           + +  V      G  ++ F+F A+    A+A ++     + +   +A R+ EL E + ++
Sbjct: 272 VGAHDVMSGKMTGGELSAFMFYAVMVAGAVATISEVVGEIQRASGAAERLIELAETEVDI 331

Query: 325 TFPQAETPAPEKVT--LTLRDVSFRYPDQPINALNALSLQANPGEHVAILGRTGCGKSTL 382
             P      P KV   L L  ++F YP+Q    L+ L+L  N GE VA++G +G GKSTL
Sbjct: 332 PAPLVPKTLPTKVRGELQLHQLNFHYPEQTQLVLSDLNLVINAGERVALVGPSGAGKSTL 391

Query: 383 LQLLTRAWDPQQGEILLNDLPLSSLSESALRRTISVVPQRVHLFSATLRDNLLLAAPNAS 442
            QLL R + P  G ILL+ + +++LS   LR   ++VPQ   +F+ ++ +N+     +AS
Sbjct: 392 FQLLQRFYVPSSGSILLDGIDIAALSPQDLRAQFALVPQDSVIFATSVLENVRYGRVDAS 451

Query: 443 DEALSDMLRRVGLENLLED--SGLNSWLGEGGRLLSGGELRRLAIARALLHDAPLMLLDE 500
           ++ + D          + +   G  ++LGE G  LSGG+ +R+AIARA+L D P++LLDE
Sbjct: 452 EQEVIDACIAARAHEFISEFSEGYQTYLGERGVRLSGGQKQRIAIARAILADRPILLLDE 511

Query: 501 PTEGLDATTESEMLELLADVMREKTVLMVTHRLRGLARFDQIIVMDDGHIIERGTHAELL 560
            T  LDA +E ++ + L ++M  KT L++ HRL  +   D+IIV D G I+  G H +L+
Sbjct: 512 ATSALDALSEQKVKQALDELMAGKTTLIIAHRLATVINADRIIVFDKGRIVASGKHQDLI 571

Query: 561 AGQGRYYQF 569
                Y +F
Sbjct: 572 KTNALYREF 580