Pairwise Alignments

Query, 685 a.a., Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 697 a.a., flagellar biosynthesis protein FlhA from Vibrio cholerae E7946 ATCC 55056

 Score =  378 bits (970), Expect = e-109
 Identities = 230/685 (33%), Positives = 386/685 (56%), Gaps = 15/685 (2%)

Query: 10  RLRPELLILVLMVMIISMFVIPLPTYLVDFLIALNIVLAILVFMGSFYIDRILSFSTFPA 69
           R  P +   V+++  ++M V+P+P +L+D     NI L+++V + + Y  R L F+ FP 
Sbjct: 17  RSMPAIGAPVMVLAALAMVVLPMPAFLLDLFFTFNIALSLVVLLVTVYTRRPLDFAAFPT 76

Query: 70  VLLITTLFRLALSISTSRLILIEAD-----AGEIIATFGQFVIGDSLAVGFVVFSIVTVV 124
           VLLI TL RLAL+++++R++L+        AG +I  FG  VIG + AVG VVF I+ ++
Sbjct: 77  VLLIATLLRLALNVASTRVVLLYGHEGPGAAGNVIEAFGNVVIGGNYAVGLVVFLILMII 136

Query: 125 QFIVITKGSERVAEVAARFSLDGMPGKQMSIDADLKAGIIDADAARERRSVLERESQLYG 184
            F+V+TKG+ R++EV+ARF+LD +PGKQM+IDADL AG+ID + AR RR  + +E+  YG
Sbjct: 137 NFMVVTKGAGRISEVSARFTLDALPGKQMAIDADLNAGLIDQEQARVRRFEVTKEADFYG 196

Query: 185 SFDGAMKFIKGDAIAGIIIIFVNFIGGISVGMTRHGMDLSSALSTYTMLTIGDGLVAQIP 244
           S DGA KF+KGDAIAGI+I+F+N IGG+S+GM ++ +    A+  YT+LTIGDGLVAQIP
Sbjct: 197 SMDGASKFVKGDAIAGILILFINIIGGLSIGMIQYDLGFKEAIEIYTLLTIGDGLVAQIP 256

Query: 245 ALLIAISAGFIVTRVNGDSDNMGRNIMTQLLNNPFVLVVTAILTISMGTLPGFPLPVFVI 304
           +LL++I A  +VTR N D D MG+ ++ QL +NP  L +TA +   MG +PG P   F+ 
Sbjct: 257 SLLLSIGAAIMVTRQNTDED-MGQQVIFQLFDNPKALTITAGILFVMGIVPGMPHFAFLF 315

Query: 305 LSVVLSVLFYFKFREAKRSAAKPKTSKGEQPLSIEEKEGSSLGLIGDLDKVSTET-VPLI 363
           L+++ S   Y+  R+ K + A+ K    +  +    +   S   +  +D +  E    LI
Sbjct: 316 LALLASGAAYWLHRKQK-TKAENKNLPAKSDVETPTQRELSWDDVQPVDVIGLEVGYRLI 374

Query: 364 LLVPKSRREDLEKAQLAERLRSQFFIDYGVRLPEVLLRDGEGLDDNSIVLLINEIRVEQF 423
            LV K +  +L   +  + +R +   D+G  +P V +RD   L  NS  + +  + V + 
Sbjct: 375 PLVDKDQGGEL--LERVKGVRKKLSQDFGFLIPPVHIRDNLELTPNSYRITLMGVAVGEA 432

Query: 424 TVYFDLMRVVNYSDEVVSFGINPTIHQQGSSQYFWVTHEEGEKLRELGYVLRNALDELYH 483
            +  D    +N            T          W+  ++ E  + LGY + ++   L  
Sbjct: 433 EIRPDQELAINPGQVYGMIDGERTRDPAFGLDAVWIREDQREHAQALGYTVVDSSTVLAT 492

Query: 484 CLAVTLARNVNEYFGIQETKHMLDQLEAKFPDLLKE-VLRHATVQRISEVLQRLLSERVS 542
            L+  L  N  +  G +E +++L+ L    P L++  V    ++  + +VLQ LL E + 
Sbjct: 493 HLSQLLTNNAAQLIGHEEVQNLLEMLSRSAPKLVENFVPDQLSLGVVVKVLQNLLHEAIP 552

Query: 543 VRNMKLIMEALALWAPREKDVINLVEHIRGAMARYICHKFANG--GELRAVMVSAEVEDV 600
           +R+++ I++ L+ +A + ++   L   +R ++ R I  +  NG   EL  + +  E+E +
Sbjct: 553 IRDIRTIVQTLSEYASKSQEPDILTAAVRISLKRLIVQEI-NGVEPELPVITLIPELEQI 611

Query: 601 IRKGIRQTSGSTFLSLDPEASANLMDLITLKLDDLLIAHKDLVLLTSVDVRRFIKKMIEG 660
           + + + Q SG     ++P  +  L   ++    +  +  +  VLLTS  +R  + K ++ 
Sbjct: 612 LHQTM-QASGGESAGIEPGLAERLQMALSHATQEQELKGEPAVLLTSGVLRSTLAKFVKN 670

Query: 661 RFPDLEVLSFGEIADSKSVNVIKTI 685
             P+L VLS+ EI D K + +++ +
Sbjct: 671 TIPNLRVLSYQEIPDEKQIRIVQAV 695