Pairwise Alignments

Query, 685 a.a., Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 699 a.a., flagellar biosynthesis protein FlhA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  372 bits (955), Expect = e-107
 Identities = 224/677 (33%), Positives = 379/677 (55%), Gaps = 14/677 (2%)

Query: 19  VLMVMIISMFVIPLPTYLVDFLIALNIVLAILVFMGSFYIDRILSFSTFPAVLLITTLFR 78
           +L++  ++M V+P+P +L+D L + NI LA++V + + Y DR L F+ FP VLL+ TL R
Sbjct: 25  LLVLAALAMIVLPIPPFLLDILFSFNIALALVVLLVAIYTDRPLDFAAFPTVLLVATLLR 84

Query: 79  LALSISTSRLILIEAD-----AGEIIATFGQFVIGDSLAVGFVVFSIVTVVQFIVITKGS 133
           LAL+++++R++L+E       AG++I  FG  VIG + AVG VVF I+ ++ F V+TKG+
Sbjct: 85  LALNVASTRVVLLEGHNGGDAAGKVIEAFGSVVIGGNYAVGVVVFIILIIINFAVVTKGA 144

Query: 134 ERVAEVAARFSLDGMPGKQMSIDADLKAGIIDADAARERRSVLERESQLYGSFDGAMKFI 193
            R+AEV+ARF+LD MPGKQM+IDADL AGII+ D AR RR+ + RE+  YG+ DGA KF+
Sbjct: 145 GRIAEVSARFTLDAMPGKQMAIDADLNAGIINQDQARTRRAEVTREADFYGAMDGASKFV 204

Query: 194 KGDAIAGIIIIFVNFIGGISVGMTRHGMDLSSALSTYTMLTIGDGLVAQIPALLIAISAG 253
           KGDAIAGI+I+ +N +GG  +G+ +HG+  + A   YT+LTIGDGLVAQIP LL++I+A 
Sbjct: 205 KGDAIAGIMILVINILGGFIIGIVQHGLTFAQAAEIYTLLTIGDGLVAQIPGLLLSIAAA 264

Query: 254 FIVTRVNGDSDNMGRNIMTQLLNNPFVLVVTAILTISMGTLPGFPLPVFVILSVVL--SV 311
            +VTR N +S +MG+ +M+Q+ ++   L + A +   MG +PG P   F+  +V+   + 
Sbjct: 265 LMVTRQN-ESGDMGQMLMSQMFDSHKSLGIAAGVLFVMGIVPGMPHMAFLSFAVMTGGAA 323

Query: 312 LFYFKFREAKRSAAKPKTSKGEQPLSIEEKEGSSLGLIGDLDKVSTET-VPLILLVPKSR 370
            F FK  EAKR+ A  +   G    +  E +  S   +  +D +  E    LI LV K +
Sbjct: 324 YFVFKRNEAKRAKALEQVKTGPTERTEREPKELSWDDVHHVDTIGLEVGYRLIPLVDKGQ 383

Query: 371 REDLEKAQLAERLRSQFFIDYGVRLPEVLLRDGEGLDDNSIVLLINEIRVEQFTVYFDLM 430
             +L      + +R +   + G  +P V +RD   L  N+  + +  + V +  +  D  
Sbjct: 384 GGEL--LSRIKGVRKKLSQELGFLVPAVHIRDNLDLSPNAYRISLMGVVVGEADIRHDCE 441

Query: 431 RVVNYSDEVVSFGINPTIHQQGSSQYFWVTHEEGEKLRELGYVLRNALDELYHCLAVTLA 490
             +N            T       +  W+  E  E  + LGY + +A   +   ++  L 
Sbjct: 442 LAINPGQVYGKLDGIETRDPAFGLEAVWIAPELREHAQTLGYTVVDAATVVATHISQILT 501

Query: 491 RNVNEYFGIQETKHMLDQLEAKFPDLLKEVLRHA-TVQRISEVLQRLLSERVSVRNMKLI 549
            N  +  G +E + ++D L    P L+   +     +  + +V+Q LL+E VSVR+++ I
Sbjct: 502 NNAAKLLGYEEAQQLMDMLAKHSPKLVDGFIPDVMPLGNVVKVMQNLLNEGVSVRDLRTI 561

Query: 550 MEALALWAPREKDVINLVEHIRGAMARYICHKFANGG-ELRAVMVSAEVEDVIRKGIRQT 608
           ++ L  +  +  D   L   +R A+ R I  + +    E+  + ++ E+E ++ + ++ T
Sbjct: 562 VQTLLEYGTKSNDTEVLTAAVRIALKRMIVQEISGPELEIPVITLAPELEQMLHQSMQAT 621

Query: 609 SGSTFLSLDPEASANLMDLITLKLDDLLIAHKDLVLLTSVDVRRFIKKMIEGRFPDLEVL 668
            G    +++P  +  +   +        +  +  +LLTS  +R  + + ++   P+L V+
Sbjct: 622 GGDG-PNIEPGLAERMQQSLADAAQKQEMVGQPAILLTSGMLRATLSRFVKYTIPNLRVI 680

Query: 669 SFGEIADSKSVNVIKTI 685
           S+ EI D K + ++  +
Sbjct: 681 SYQEIPDEKQIRIVSAV 697