Pairwise Alignments

Query, 685 a.a., Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 697 a.a., type III secretion inner membrane protein, HrcV family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  483 bits (1244), Expect = e-140
 Identities = 269/678 (39%), Positives = 418/678 (61%), Gaps = 7/678 (1%)

Query: 14  ELLILVLMVMIISMFVIPLPTYLVDFLIALNIVLAILVFMGSFYIDRILSFSTFPAVLLI 73
           +L I++L+V++I++ ++PLPT LVD LI  N+ L+ ++ M S Y+  IL FS FP +LL 
Sbjct: 19  DLAIVLLLVVVIALMILPLPTPLVDTLIGANMALSFVMLMMSMYVKSILDFSVFPTMLLF 78

Query: 74  TTLFRLALSISTSRLILIEADAGEIIATFGQFVIGDSLAVGFVVFSIVTVVQFIVITKGS 133
           TTLFR+ L+I+T+RLIL++ADAGEII  FG++ +G +  VG VVF I+T+VQF+VI KG+
Sbjct: 79  TTLFRVGLNITTTRLILLQADAGEIIFVFGEYALGGNFVVGAVVFVILTIVQFLVIAKGA 138

Query: 134 ERVAEVAARFSLDGMPGKQMSIDADLKAGIIDADAARERRSVLERESQLYGSFDGAMKFI 193
           ERVAEV ARF+LD MPGKQMSIDAD++AG+ID + A+ RR+ + +ESQ+YG+ DGAMKF+
Sbjct: 139 ERVAEVGARFTLDAMPGKQMSIDADMRAGVIDMEEAQRRRNTVSQESQMYGAMDGAMKFV 198

Query: 194 KGDAIAGIIIIFVNFIGGISVGMTRHGMDLSSALSTYTMLTIGDGLVAQIPALLIAISAG 253
           KGD+IAG+I+  VN +GG  +G+T+HGM    AL TY +LTIGDGLV+QIP+LL++ISAG
Sbjct: 199 KGDSIAGMIVALVNIVGGTVIGITQHGMAAGEALHTYGILTIGDGLVSQIPSLLVSISAG 258

Query: 254 FIVTRVNGDSDNMGRNIMTQLLNNPFVLVVTAILTISMGTLPGFPLPVFVILSVVLSVLF 313
            ++TR      N+G  I  Q+   P  L++   L      +PGFP P  + L++ L    
Sbjct: 259 ILITRSGDSGGNVGAQIGGQIFGQPKALLMAGGLVFLFALVPGFPKPQLMGLALALGGFG 318

Query: 314 YFKFREAKRSAAKPKTSKGEQPLSIEEKEGSSLGLIGDLDKVSTETVPLILLVPKSRRED 373
           Y   R A+  A     ++  + L+   K   + G     D  +  TVP+IL +  +  E 
Sbjct: 319 YVLRRMAELPAETDPRAELSRSLAPAVKPRPARGGAQQGDDFA-PTVPIILDLSPALGES 377

Query: 374 LEKAQLAE---RLRSQFFIDYGVRLPEVLLRDGEGLDDNSIVLLINEIRVEQFTVYFDLM 430
           L+   L +   RLR   + D GV  P + +R    L     VL +NEI + +  +   + 
Sbjct: 378 LDYDSLNDELARLRRALYFDLGVPFPGINVRPNPALPGLCYVLNLNEIPMSRGVLEKGMS 437

Query: 431 RVVNYSDEVVSFGINPTIHQQ--GSSQYFWVTHEEGEKLRELGYVLRNALDELYHCLAVT 488
            V +  + +   G+     ++     +  WV  E+   L + G    +    L + L++ 
Sbjct: 438 LVRDTRENLAMMGVAVREGERFLPEVEPLWVPDEQCRLLEKAGIGHMSHARILAYHLSLV 497

Query: 489 LARNVNEYFGIQETKHMLDQLEAKFPDLLKEVLRHATVQRISEVLQRLLSERVSVRNMKL 548
           L+R+ + + G+QE K++LD++E + PDL++EV R   VQRI+E+ QRL+ E+VS+R+++ 
Sbjct: 498 LSRHASTFIGMQEAKYLLDRMEERAPDLVREVTRLLPVQRIAEIFQRLVQEQVSIRDLRS 557

Query: 549 IMEALALWAPREKDVINLVEHIRGAMARYICHKFANG-GELRAVMVSAEVEDVIRKGIRQ 607
           I+EAL  W+ +EKD + L E++R A+ R I +  + G   L A+++   VE+ IRK +RQ
Sbjct: 558 ILEALIEWSAKEKDTVMLTEYVRSALKRQISYMHSRGQNMLPAILLDPGVEETIRKAVRQ 617

Query: 608 TSGSTFLSLDPEASANLMDLITLKLDDLLIAHKDLVLLTSVDVRRFIKKMIEGRFPDLEV 667
           TS   FL+L+P  +   M  +           +  V++TS+D+RR+++++IEG    L V
Sbjct: 618 TSAGAFLALEPAVTERFMKAVADAAGPYAQQTQKPVIMTSMDIRRYVRRLIEGDHYTLAV 677

Query: 668 LSFGEIADSKSVNVIKTI 685
           +S+ E+    SV  +  I
Sbjct: 678 MSYQELTPEISVQPVNRI 695