Pairwise Alignments

Query, 553 a.a., Type III secretion transcriptional activator HilA from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 222 a.a., DNA-binding response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 55.1 bits (131), Expect = 3e-12
 Identities = 28/76 (36%), Positives = 44/76 (57%)

Query: 29  RSEKKVNIPPKEYAVLVILLEAAGEIVSKNTLLDQVWGDAEVNEESLTRCIYALRRILSE 88
           R+ K++ +   +  +L +LL+ A  IVSK  ++D VWGD     ++L   IY LR  L +
Sbjct: 144 RAGKEIKLSKIQRTILTLLLKHAPAIVSKEQVIDAVWGDDAPCSDALRSHIYGLRSALDK 203

Query: 89  DKEHRYIETLYGQGYR 104
                 +ET++GQGYR
Sbjct: 204 GFTDSKLETIHGQGYR 219