Pairwise Alignments

Query, 553 a.a., Type III secretion transcriptional activator HilA from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 1075 a.a., transcriptional regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 53.5 bits (127), Expect = 4e-11
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 2/98 (2%)

Query: 9   VSNKKFVFDDFILNMDG-SLLRSEKKVNIPPKEYAVLVILLEAAGEIVSKNTLLDQVWGD 67
           +S+  F   ++ +N    SLL  ++   + PK   VL+ L + AGE+VS + ++   W  
Sbjct: 1   MSDSTFFLGEWQVNPSANSLLLGKQVKQLEPKAMDVLLFLCQNAGEVVSSDEIVSHCWPG 60

Query: 68  AEVNEESLTRCIYALRRILSED-KEHRYIETLYGQGYR 104
            +  +  L + I  LRR L +   E RYIET+  +GYR
Sbjct: 61  VDTGDNPLHKIINQLRRALGDSATESRYIETIRKRGYR 98