Pairwise Alignments

Query, 390 a.a., Protein AraJ precursor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 385 a.a., arabinose efflux permease from Herbaspirillum seropedicae SmR1

 Score =  227 bits (579), Expect = 4e-64
 Identities = 128/371 (34%), Positives = 213/371 (57%), Gaps = 7/371 (1%)

Query: 5   IFSLALGTFGLGMAEFGIMGVLTELARDVGITIPAAGHMISFYAFGVVLGAPVMALFSSR 64
           +F+LA+  FG+G  EF IMG+L ++ARD+G+T PAAG ++S YA GV  GAP++A+ +++
Sbjct: 5   LFALAVAAFGIGTTEFVIMGLLPDVARDLGVTAPAAGMLVSGYALGVAAGAPILAILTAK 64

Query: 65  FSLKHILLFLVMLCVMGNAIFTFSSSYLMLAVGRLVSGFPHGAFFGVGAIVLSKIIRPGK 124
           +  K  L+ L+ L ++GN +   + +Y+ L V R+V+ F H AFFG+G++V ++++ P K
Sbjct: 65  WPRKQALVGLMCLFILGNVLCALAPNYVFLMVARVVTAFCHAAFFGIGSVVAAELVAPQK 124

Query: 125 VTAAVAGMVSGMTVANLVGIPFGTYLSQEFSWRYTFLLIAVFNIAVLTAIFFW--VPDIR 182
              AVA M +G+TVAN++G+P GT       WR TF   AV  I VL AI  W  +P   
Sbjct: 125 RAQAVALMFTGLTVANILGVPLGTAFGHAAGWRSTF--GAVTAIGVLAAIMLWTMLPKKI 182

Query: 183 DKAQGSLREQFHFLRSPSPWLIFAATMFGNAGVFAWFSYIKPFMMYISGFSETSMTFIMM 242
               G++ ++F  +      L    +   +  +F+  +YI   ++ ++GF+    +++++
Sbjct: 183 PMQAGNIFQEFRSIIDTRVQLSLLTSTLASISMFSVITYIAYILLDVTGFTTQQESWVLL 242

Query: 243 LVGLGMVLGNLLSGKLSG-RYTPLRIAVVTDLVIVLSLMALFFFSGYKTTSLTFAFICCA 301
           L G G+ +G L+ GKL+  +  P+   V   + +VL L ++   S YK  +L   F   A
Sbjct: 243 LFGAGITVGGLVGGKLADWKLMPVMCGVFLCIAVVLGLFSI--TSHYKWPTLATMFAWGA 300

Query: 302 GLFALSAPLQILLLQNAKGGELLGAAGGQIAFNLGSAIGAWCGGLMLTLGFAYHYVALPA 361
             FA+    QI +L  A+G   L +   Q AFNLG+A GAW GGL ++ G     + L  
Sbjct: 301 FAFAVVPGAQIRVLDTARGAPNLASTLNQGAFNLGNATGAWVGGLAISAGLPLTDLPLIG 360

Query: 362 ALLSFSAMSSL 372
           A  +   ++++
Sbjct: 361 AFFALLGLATV 371