Pairwise Alignments

Query, 326 a.a., Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 357 a.a., ribosomal large subunit pseudouridine synthase D (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  192 bits (488), Expect = 1e-53
 Identities = 130/322 (40%), Positives = 183/322 (56%), Gaps = 26/322 (8%)

Query: 11  VSENQLGQRLDQALAEMFPDYSRSRIKEWILNQRVLVNGQLCDKPKEKVLGGERVAIDAE 70
           V + Q   R+D+ L E   + SR+RI++   +  V+ NG    KP +     + + +   
Sbjct: 34  VDKGQAMVRVDKYLFERIVNASRNRIQKAAEDGFVMANG----KPVKSSYKVKPLDVITV 89

Query: 71  IDEEIRFE----AQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPPI 126
           + +  R+E     ++IPL+IVYED  ++V+NKP  LVVHPG GN  GT++NAL  +   I
Sbjct: 90  MMDRPRYENEIIPENIPLNIVYEDPYVMVVNKPAGLVVHPGHGNYHGTLVNALAWHMKDI 149

Query: 127 ----ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMTAG 182
               A+ P  G+VHR+DKDT+GL+V+AKT  A+T L      +   R Y A+  G++   
Sbjct: 150 PEYDANDPHVGLVHRIDKDTSGLLVIAKTPDAKTNLGIQFFNKTTKRRYRALVWGNVEQD 209

Query: 183 -GTVNEPISRHPTKRTHMSVHP---MGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRV 238
            GT+   I+R+P  R  M+V     MGK AVTHYR++E     T +   LETGRTHQIRV
Sbjct: 210 EGTIVGSIARNPKDRMQMAVMSDPSMGKHAVTHYRVLERLGYVTLVECILETGRTHQIRV 269

Query: 239 HMAHITHPLVGDQVYGGRPRPPKGAS----EEFISTLRKFD---RQALHATMLRLYHPVS 291
           HM HI H L  D+ YGG     KG      ++F++    FD   RQALHA  L   HPV+
Sbjct: 270 HMKHIGHVLFNDERYGGH-EILKGTHFSKYKQFVNNC--FDTCPRQALHAMTLGFVHPVT 326

Query: 292 GIEMEWHAPIPQDMVDLIDAMR 313
           G EM + + +P DM  LI+  R
Sbjct: 327 GEEMYFTSELPDDMTRLIEKWR 348