Pairwise Alignments

Query, 326 a.a., Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 431 a.a., ribosomal large subunit pseudouridine synthase D from Burkholderia phytofirmans PsJN

 Score =  255 bits (651), Expect = 2e-72
 Identities = 146/326 (44%), Positives = 199/326 (61%), Gaps = 14/326 (4%)

Query: 1   MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILNQRVLVNGQLCDKPKEKVL 60
           +A     +  V +   G+RLD+ LA +FP++SR+R++ WI  +RV ++G+     +   L
Sbjct: 60  VADETPRSVVVPDELAGERLDKVLARVFPEFSRNRLQSWIEAERVRIDGKPAKIRQPVPL 119

Query: 61  GGERVAIDAEIDEEIRFEAQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALL 120
           G     +   + E++ F  + +PL+IVYEDD ++VINKP  +VVHP AGN  GTVLN LL
Sbjct: 120 GATIELVPDLLPEQLAFTPEPVPLEIVYEDDTLVVINKPAGMVVHPAAGNWSGTVLNGLL 179

Query: 121 HYY-PPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHM 179
           + Y    A +PRAGIVHRLDK+T+GLMVVA+T+ AQT LV  LQ R + R Y A+  G+M
Sbjct: 180 YRYGDAAAGLPRAGIVHRLDKETSGLMVVARTLEAQTDLVRQLQARTVKRRYLALVWGNM 239

Query: 180 TAGGTVNEPISRHPTKRTHMSV--HPMGKPAVTHYRIME----HFRVHTRLRLRLETGRT 233
              GT++ PI R P +RT M+V     GKPA TH+R ++      +  T +   LETGRT
Sbjct: 240 PEEGTIDAPIGRDPRERTRMAVVTSASGKPARTHFRRVDSAIWQRQPVTAIHCDLETGRT 299

Query: 234 HQIRVHMAHITHPLVGDQVYGGRPRPPKGASEEFISTLRK-FDRQALHATMLRLYHPVSG 292
           HQIRVH AHI HPL+GD VYG      +   +  ++ L   F RQALHA  L L HP +G
Sbjct: 300 HQIRVHCAHIGHPLLGDPVYG------RARGKRSVTPLPDGFARQALHAWRLGLIHPQTG 353

Query: 293 IEMEWHAPIPQDMVDLIDAMRADFED 318
             M+W A  P DM  L  A+    +D
Sbjct: 354 RTMQWRADAPADMEALSAALGLGRDD 379