Pairwise Alignments

Query, 470 a.a., Multidrug transporter MdtD from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 454 a.a., EmrB/QacA subfamily drug resistance transporter from Herbaspirillum seropedicae SmR1

 Score =  382 bits (981), Expect = e-110
 Identities = 211/453 (46%), Positives = 296/453 (65%), Gaps = 12/453 (2%)

Query: 5   PDNTRWQLWIVAFGFFMQSLDTTIVNTALPSMAKSLGESPLHMHMVVVSYVLTVAVMLPA 64
           P   R  LWIVA GFFMQ+LDTTIVNTALP+MA+SLGE  L+MH VVV+Y LT+A + PA
Sbjct: 4   PVTQRALLWIVASGFFMQTLDTTIVNTALPAMARSLGEPVLNMHPVVVAYTLTMASLTPA 63

Query: 65  SGWLADKIGVRNIFFAAIVLFTLGSLFCALSGTLNQLVLARVLQGVGGAMMVPVGRLTVM 124
           SGWLAD+ G R ++FAAI+LF+LGSL CA++ +L  L+ ARV+QG+GG+M++PVGRL V+
Sbjct: 64  SGWLADRFGTRRMYFAAILLFSLGSLLCAMASSLPMLLAARVVQGLGGSMLLPVGRLAVL 123

Query: 125 KIVPRAQYMAAMTFVTLPGQIGPLLGPALGGVLVEYASWHWIFLINIPVGIVGAMATFML 184
           + VP AQY+AA+  +++ GQ+GP++GP LGG LVE  SWHWIFLIN+PVG++G  A    
Sbjct: 124 RAVPGAQYIAALASISIAGQLGPVVGPVLGGWLVESLSWHWIFLINLPVGVLGMGAVLYF 183

Query: 185 MP-NYIIETRRFDLPGFLLLAIGMAVLTLALDGSKSMGISPWTLAGLAAGGAAAILLYLF 243
           +P + +  T RFDL G +LL+  M   +LALD       + W++A L    A  +L Y  
Sbjct: 184 LPDDSLAGTPRFDLLGCVLLSACMVAFSLALDVPFDSHRTGWSIA-LFVVAALTVLGYWR 242

Query: 244 HAKKNSGALFSLRLFRTPTFSLGLLGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMM 303
           HA  +   LF L LF  P FS+GL G+   RIGS  +PF+ P+ LQ+ LG+SP HAG+++
Sbjct: 243 HASVHPRPLFRLGLFGEPNFSIGLAGNLVCRIGSSAVPFLLPLLLQVRLGYSPLHAGMVL 302

Query: 304 IPMVLGSMGMKRIVVQIVNRFGYRRVLVATTLGLALVSLLFMSVALL--GWYYLLPLV-L 360
           +P  +     K  +  +V RFGY R L+  T   A+V    MS AL+   W     +V L
Sbjct: 303 LPAAIAGTIAKPWIAPLVKRFGYDRFLLVNT---AIVGAAIMSFALITPDWPLTAAIVQL 359

Query: 361 LLQGMVNSARFSSMNTLTLKDLPDTLASSGNSLLSMIMQLSMSIGVTIAGMLLGMFGQQH 420
            + G  NS +F++MN++TLK L    A SGNSL SM+  L++ +GVTI G ++ +F +  
Sbjct: 360 AIFGASNSMQFAAMNSVTLKGLDKRDAGSGNSLFSMVQMLAIGLGVTIGGTMVNLF-KSE 418

Query: 421 IGIDSSATHHVFMYTWLCMAVIIALPAIIFARV 453
           +G   +AT+  F  T+  +  I    A +F ++
Sbjct: 419 VG---TATNASFQITFAIVGAITLASAWVFRKM 448