Pairwise Alignments

Query, 586 a.a., ATP-dependent RNA helicase YejH from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 590 a.a., DNA damage response helicase (yejH or radD) (from data) from Shewanella oneidensis MR-1

 Score =  622 bits (1605), Expect = 0.0
 Identities = 314/579 (54%), Positives = 403/579 (69%), Gaps = 9/579 (1%)

Query: 5   LRPYQQEAVDATLSHFRRHRTPAVIVLPTGAGKSLVIAELARVARGRVLVLAHVKELVAQ 64
           LR YQQ+AVDA + HF++    AV+VLPTGAGKS+VIAELAR+ARGRVLVL HVKELVAQ
Sbjct: 11  LRDYQQQAVDAAIVHFKKSTDSAVLVLPTGAGKSIVIAELARIARGRVLVLTHVKELVAQ 70

Query: 65  NHAKYCALGLEADIFAAGLKRKESQGKVVFGSVQSVARNLDAFQEEFSLLIVDECHRIGD 124
           N  K   L  EA I++AGL +K S GK V  S+QS AR L  F E FSL+I+DECHR+  
Sbjct: 71  NAQKVGLLTTEASIYSAGLNKKSSVGKTVVASIQSAARALGQFNEPFSLVIIDECHRVSL 130

Query: 125 DEDSQYQQILTHLSKVNPHLRLLGLTATPFRLGKGWIYQFHYHGMVRGNDNALFRDCIYE 184
           ++ SQYQQ+L+HL + NP L+LLGLTATP+RLG GWIY+ HYHG V   +  +F  CI+E
Sbjct: 131 EKTSQYQQLLSHLQQRNPQLKLLGLTATPYRLGTGWIYKRHYHGKVGSPELGIFEQCIFE 190

Query: 185 LPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQ 244
           LP+R +IK GYLT P   D    QYDFS+++A  NG + EA +N  L    R T  I+ Q
Sbjct: 191 LPIRPLIKQGYLTAPTLFDGLSAQYDFSQIKANKNGEYPEAQVNDLLNHAGRATTAIVKQ 250

Query: 245 IMEFAQTRKGVMIFAATVEHAKEIVGLL---PADDAALITGDTPGPERDALIDNFKAQRF 301
           ++E +  R+G++IFAATV HA+EIV  L     +  A++T  TP  ERD LI+ FKA+  
Sbjct: 251 LIELSHHRQGIIIFAATVRHAEEIVSQLNKEHREQTAIVTAQTPDNERDELIERFKAREL 310

Query: 302 RYLVNVSVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTDCLILDYAGNPH 361
           ++LVNV+VLTTGFDAPHVDLIAILRPT SVSL+QQ++GRGLR+  GK DCL++DYA N +
Sbjct: 311 KFLVNVAVLTTGFDAPHVDLIAILRPTASVSLFQQMIGRGLRICEGKKDCLVIDYAANGY 370

Query: 362 DLYAPEVGSPKGKSDNVPVQVFCPACGFANTFWGKTTADGTLIEHFGRRCQGWFEDDDGH 421
           DLY PEVG  K  S +VPVQV CP C FAN FWG T  DG +IEHFGRRCQG  E   G 
Sbjct: 371 DLYFPEVGQAKPNSKSVPVQVHCPVCQFANIFWGLTDDDGDIIEHFGRRCQGIVE-HHGK 429

Query: 422 REQCDFRFRFKNCPQCNAENDIAARRCRECDAILVDPDDMLKAALRLKDALVLRCSGMTM 481
           ++QCDFRFR K+CP C  ENDIAAR C+ C + L+DPD  LK  L  +   + RC  MT+
Sbjct: 430 KQQCDFRFRAKSCPDCGQENDIAARICQHCQSTLIDPDKRLKQVLNKQHHHLFRCQHMTL 489

Query: 482 QHGQDEKGEWLKITYYDEDGADVSERFRLHTPAQRTAFEQLFIRPHTRTPGV-PLRWITA 540
               D+ G+ LK+ Y D DG + +  F+L TPAQ  A   LFI PH+RTPG+ P ++   
Sbjct: 490 ---MDDAGD-LKVQYLDIDGNEFNRHFKLQTPAQWRALYALFIFPHSRTPGLKPKQYKQV 545

Query: 541 ADIVAQQALLRHPDFVVARMKGQYWQVREKVFDYEGRFR 579
           ++++A  A  + PD ++ +   + W + E  FDY+GR++
Sbjct: 546 SELIADSATFKMPDLLLLKKHKKGWDLLESYFDYQGRYQ 584