Pairwise Alignments

Query, 561 a.a., DNA ligase (EC 6.5.1.2), LigB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 669 a.a., DNA ligase, NAD-dependent (RefSeq) from Shewanella loihica PV-4

 Score =  114 bits (285), Expect = 1e-29
 Identities = 121/514 (23%), Positives = 219/514 (42%), Gaps = 52/514 (10%)

Query: 32  EEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTPVSPPLNGT 91
           +EI +L  +L   N  Y+     ++ D+ YD+L  RL + +    +   +   +  + G 
Sbjct: 6   DEIKQLTDELNQHNYRYYVDDAPSIPDAEYDRLMRRLQELEAEHPELALADSPTQRVGGE 65

Query: 92  TM---HPVAHTGVRKLVDRQAVEQ-----WMRGRSEL------WVQPKVDGVAVTLVYQN 137
            +   + V H      +D    E+     + R   +L        +PK+DG+AV+++Y++
Sbjct: 66  ALSKFNQVTHLKPMLSLDNVFSEEEFNAFYKRVGDKLPDTPAFCCEPKLDGLAVSILYRD 125

Query: 138 GKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAVLQ--GEIFLQREG----HIQ 191
           G   RA +RG+G  GED T  +R I S+P   +G+    +L+  GE+F+ +      + +
Sbjct: 126 GVFERAATRGDGTVGEDITENVRTIKSVPLRLRGSGFPPLLEVRGEVFMPKAAFEAVNDK 185

Query: 192 QRMGG----MNARSKVAGMLMRQDNA-SALNSLGIFIWA--------WPDGPANMPERLS 238
            R  G    +N R+  AG L + D+  +A  SL  + +A        WP   ++  E+L 
Sbjct: 186 ARAKGEKLFVNPRNAAAGSLRQLDSKITASRSLAFYAYALGVVEPETWPLAASHF-EQLV 244

Query: 239 QLAKAGFSLTNKYTLAVKDASEVERARQSWLT--SALPFVTDGVVIRMAKEPASQH--WR 294
           QL + G  ++++  +   D   V    Q  LT  S L +  DGVV+++      Q   + 
Sbjct: 245 QLKEWGCPVSSEVKVCA-DIPSVLAYYQDILTRRSELAYEIDGVVLKVNDIAQQQTLGFV 303

Query: 295 PGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDDKRVQRVNIGSVKR 354
                W  A+K+P   ++ Q+  + F VG++G +T VA L PV +    V    + +   
Sbjct: 304 AKAPRWATAYKFPAQEEITQLEGVDFQVGRTGAVTPVARLQPVFVGGVTVSNATLHNADE 363

Query: 355 WEAWDIAPGDQILVSLAGQGIPRLDEVVWRSR---ERSKPVPPDS----------HFNSL 401
                +  GD +++  AG  IP++  VV   R    ++   PP               ++
Sbjct: 364 IARLGVMIGDSVIIRRAGDVIPQVVAVVPEKRPSDAQAIQFPPQCPVCGSDVERVEGEAV 423

Query: 402 TCFYASATCQEQFISRLIWLGSRSALGLDGMGEASWRALHQTHRFEHIFSWLTLTSAQIA 461
                   C+ Q    +    SR AL +DGMG+     L              LT++ I 
Sbjct: 424 ARCTGGLVCEAQRKEAIKHFASRKALDIDGMGDKVVEQLIDKELVASPADLFKLTASAIT 483

Query: 462 NTPGFAKGKSEQIWRQFNLARRQPFTRWIMAMDI 495
                    +  +      A++  F R++ ++ I
Sbjct: 484 MLDRMGMKSATNLVNALEAAKQTTFARFLYSLGI 517