Pairwise Alignments

Query, 561 a.a., DNA ligase (EC 6.5.1.2), LigB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 691 a.a., DNA ligase, NAD-dependent (RefSeq) from Shewanella sp. ANA-3

 Score =  115 bits (288), Expect = 6e-30
 Identities = 133/564 (23%), Positives = 229/564 (40%), Gaps = 54/564 (9%)

Query: 18  SGALCPAWPPARAAEEIARLQQQLADWNDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQ 77
           S  L  A  P  A   +  L Q L + N  Y+     ++ DS YD+L  RL Q +    Q
Sbjct: 13  SELLSQAVTPHNAQPIMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQ 72

Query: 78  DVSSTPVSPPLNGTTM---HPVAHTGVRKLVDRQAVEQWMR----------GRSELWVQP 124
            V++   +  + G  +     + H      +D    E              G      +P
Sbjct: 73  FVAADSPTQRVGGMALAKFEQITHLKPMLSLDNAFDEADFSAFHKRVSDRVGEVSFCCEP 132

Query: 125 KVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIRLIPSIPQTTQGALANAVLQ--GEI 182
           K+DG+AV+++Y+NG L RA +RG+G  GED T  ++ I SIP   +G     +++  GE 
Sbjct: 133 KLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEVRGEA 192

Query: 183 F--------LQREGHIQQRMGGMNARSKVAGMLMRQDNASALNSLGIFIWAWPDGPANMP 234
           F        L     ++     +N R+  AG L RQ ++    S  +  +A+  G     
Sbjct: 193 FMPKAAFEALNERARLKDEKLFVNPRNAAAGSL-RQLDSKITASRALSFYAYALGVVEPT 251

Query: 235 ---------ERLSQLAKAGFSLTNKYTLAVKDASEVERARQSWLT--SALPFVTDGVVIR 283
                    E+L QL   G  ++++  +   + S+V    Q  LT  + LPF  DGVV++
Sbjct: 252 SHELAKTHYEQLQQLKSWGLPVSSEIKVC-DELSQVFAYYQDILTRRADLPFEIDGVVMK 310

Query: 284 M--AKEPASQHWRPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASLVPVILDD 341
           +    +  +  +      W  A+K+P   ++  +  + F VG++G +T VA L PV +  
Sbjct: 311 VNDIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGG 370

Query: 342 KRVQRVNIGSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSR-ERSKPVPPDSHF-- 398
             V    + +        +  GD +++  AG  IP++  +V   R E +K +    H   
Sbjct: 371 VTVSNATLHNADEIARLGVMVGDTVIIRRAGDVIPQIVAIVPERRPEDAKAIAFPQHCPV 430

Query: 399 ----------NSLTCFYASATCQEQFISRLIWLGSRSALGLDGMGEASWRALHQTHRFEH 448
                      ++        C+ Q    +    SR AL +DGMG+     L      + 
Sbjct: 431 CGSLVERLEGEAVARCSGGLFCEAQRKEAIKHFASRKALDIDGMGDKIVEQLIDKELVQS 490

Query: 449 IFSWLTLTSAQIANTPGFAKGKSEQIWRQFNLARRQPFTRWIMAM---DIPLTQAALQAS 505
                 LT++ +          +  +      A+     R++ A+   ++  T AA  A+
Sbjct: 491 PADLFKLTASMMTMLDRMGIKSATNLALAIEAAKTTTLPRFLYALGIREVGETTAANLAT 550

Query: 506 GDRSWEQLLMRTEQHWRQLPATGE 529
              S E L + T +   Q+   GE
Sbjct: 551 HFGSLEALRVATIEQLIQVEDIGE 574