Pairwise Alignments

Query, 544 a.a., Nickel ABC transporter, periplasmic nickel-binding protein nikA2 (TC 3.A.1.5.3) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 565 a.a., oligopeptide-binding protein, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  121 bits (303), Expect = 8e-32
 Identities = 99/420 (23%), Positives = 187/420 (44%), Gaps = 29/420 (6%)

Query: 68  SHGSYLLLHAPLLKQNADMSWGNLLTEKVDTSPDGKIWTLTLKPGLKFSDGSPLTAEDVV 127
           SH     L+  LL+ N D+       E  +    G++    L+ G+++ DG  LTA+DV 
Sbjct: 85  SHEVASQLYVGLLRYNRDLEIEPWAAESYEVLDGGRLLRFKLRKGIRWQDGVELTADDVE 144

Query: 128 FTYN-------KAAKSGGKIDMGNFSHARALDAR-RIEMTLSHPQSTFVNVLGSLGIVPA 179
           FTY            +G  + +  F          R +   +    +++  +    ++  
Sbjct: 145 FTYKLIIAPTTPTPYAGDFLAVQEFRKTGRYSFEVRYDKPFARSLISWMQDIMPKHLLEG 204

Query: 180 SRYDEKTFAREPIGAGPYRLVSFQPGQQLIVEANPWYAGKKNDFNRLVF-VFLDEDNAYA 238
                  FAR+P+GAGPY L S++PG +L++ ANP Y   +   + +V+ +  D    + 
Sbjct: 205 QDVRTTPFARKPVGAGPYMLESWEPGTRLVLRANPDYFEGRPHIDEVVYRIIPDNATMFL 264

Query: 239 AARSGQLGLVRIAPSMAVAPQQDNLKLWVRDSVENRGIVFPMVPAGKKDANDYPVGNDVT 298
             ++G+L ++ ++P   +  +Q +   W RD  + R + F     G      Y + +   
Sbjct: 265 ELKAGKLDMMGLSPQQYL--RQTDGYTWERDWRKYRYLSFGYTYLG------YNLKHPFF 316

Query: 299 ADVAIRRAINYAINRKQLAEQVMEGHAIPAYSAVQGLPW-QNPSVIFSDGDIAKARAILE 357
           AD  +RRAI +AI+R+ + + V+ G  +P     +   W  N  +     D A A  +L 
Sbjct: 317 ADARVRRAIAHAIDREGIIKGVLLGQGVPTVGPYKPGTWVYNDRLTAYSYDPALAAEMLR 376

Query: 358 EAGWK-INSAGVREKAGKEARLTLWYASGDSTRRDLAEAVRAMLQPLGIVVSLQSGSWET 416
           EAGW+  +  G+ ++ G+    T+    G+  R   A  +++ L+ +GI V +++  W  
Sbjct: 377 EAGWQDTDGDGILDREGRPFAFTILTNQGNDQRIKTATIIQSQLKDVGIRVQIRTVEWAA 436

Query: 417 VERHM----HANPTLFGWG---SLDPMELFHHYSGKAAGVEYYNPGYYSNPAVEAHLKQA 469
             +        +  + GW      D  +++H    +  G+ +     Y N  V+A L++A
Sbjct: 437 FIKEFVNTGRFDAVILGWNITQDPDAYDVWHSSKAEPGGLNFVG---YRNAEVDAVLEKA 493