Pairwise Alignments

Query, 1148 a.a., Transcription-repair coupling factor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 1153 a.a., transcription-repair coupling factor from Synechococcus elongatus PCC 7942

 Score =  643 bits (1659), Expect = 0.0
 Identities = 403/1049 (38%), Positives = 586/1049 (55%), Gaps = 61/1049 (5%)

Query: 74   ETLPYDSFSPHQEIISSRLSTLYQLPSMQRGVLIVPVNTLMQ-RVCPHSYLHGHALVMKK 132
            E+ PY++F P  E++  +L  L  L    + V IV     +Q  + P   L      +++
Sbjct: 86   ESSPYEAFDPESELVWGQLQVLADLLEQSQPVAIVATERSLQPHLPPVEALRPFCQTLQR 145

Query: 133  GQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPYRLDFFDDEIDSL 192
            GQ ++   L  +    GY  VD V   G+++ RG ++DLFP+ +E P RL+ F DE++ L
Sbjct: 146  GQEVNLGELADRFAQFGYERVDTVETEGQWSRRGDIIDLFPVSAELPVRLELFGDELERL 205

Query: 193  RLFDADTQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDAEHIYQQVSKGT 252
            R FD  TQR+L+E+E + L P     T  A++       R   +   +AE    Q  +G 
Sbjct: 206  REFDPATQRSLDEIEVLRLTP-----TSYASVIAAALADRSLDDWLTEAEQEAWQ--EGQ 258

Query: 253  LPAGIEYWQPLFFSEPLPPLFSYFPANTLVVNTGSLETSAERFQADTLARFENRGVDPMR 312
             P G+  +  + F E    L  Y PA T++     L+  A            +R ++ ++
Sbjct: 259  PPEGMRRFLGVAF-ERSASLLDYLPAGTVIAIDEPLQCRAH----------SDRWIEHVQ 307

Query: 313  PLLPPEA-LWLRVDELFS----ELKRWPRLQLK--TDHLPEKAANTNLGFQKLPDLAIQA 365
                 +A +W  +   F     E++ + R++L         +    +L  + LP L  Q 
Sbjct: 308  DHWQEQAQVWPAIHRDFQAAWEEIRCFQRIELSQLNSSSDSELPVLDLAARSLPVLPHQF 367

Query: 366  QQKAPLDALRKFLESFSGPVIFSVESEGRREA--LGELLARIKIAPK-----RILRLDEA 418
             + A  D +R   +  S   I+ V ++  R    L E     +  P       I RL E 
Sbjct: 368  GKLA--DFIRTERDRHS---IWLVSAQPSRMVALLQEHDCPSQFIPNPRDYPAIDRLSEK 422

Query: 419  QDAGRYLMIGAAE-HGFIDTQRNLALICESDLLGERVA-------RRRLDSRRTINPDTL 470
            +        G AE  GF      L LI + +  G+ V        +RR  + + ++ D  
Sbjct: 423  RVPIALKHSGLAELEGFSLPTFRLTLITDRECFGQHVLASPTYVRKRRRAASKQVDRD-- 480

Query: 471  IRNLAELHVGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLIS 530
                  L  G  VVH  HG+GR+  + +L   G   EYL+L YA D  L V    +  +S
Sbjct: 481  -----RLKPGDYVVHRSHGIGRFVKLESLSLSGEMREYLVLQYA-DGLLRVAADQMGSLS 534

Query: 531  RYAGGAEESAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQY 590
            RY G   E   L  +   AW + + KA + VR VA +LL +YAQR+ +EG A+  D+   
Sbjct: 535  RYRGMGGERPELSSMTSKAWEKTKAKARKAVRKVAVDLLKLYAQRSQQEGHAYPPDQPWQ 594

Query: 591  QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK 650
            Q   +SFP++ T DQ +A+ AV  DM  P  MDRLVCGDVGFGKTEVA+RA F AV   K
Sbjct: 595  QELEESFPYQPTADQLKAVEAVKRDMESPQPMDRLVCGDVGFGKTEVAVRAIFKAVTAGK 654

Query: 651  QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGT 710
            QVA+L PTT+L QQHY   ++RFA +P++I +L+RFR+A E+  I    A G++D+++GT
Sbjct: 655  QVALLAPTTILTQQHYHTLKERFAPYPIQIGLLNRFRTASERQNIQQRLATGELDVVVGT 714

Query: 711  HKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM 770
            H+LL    + RDLGLL+VDEE RFGV  KE+IKA++  VD+LTL+ATPIPRTL MA+SG+
Sbjct: 715  HQLLSKGTQFRDLGLLVVDEEQRFGVNQKEKIKALKTQVDVLTLSATPIPRTLYMALSGV 774

Query: 771  RDLSIIATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLA 830
            R++S+I TPP  R  +KT +  YD   VR AI +EI RGGQV+Y+   VE I+  A RL 
Sbjct: 775  REMSLITTPPPSRRPIKTHLMPYDLEAVRTAISQEIDRGGQVFYVVPRVEGIEAIATRLQ 834

Query: 831  ELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADH 890
            E++P  RIA+ HGQM E ELE  M  F++   +V++CTTIIE+G+DIP  NTI+IE A  
Sbjct: 835  EMLPSLRIAVAHGQMPEGELEATMLAFNNNEADVMICTTIIESGLDIPRVNTILIEDAQR 894

Query: 891  FGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDL 950
            FGL+QL+QLRGRVGR+  QA+AWL  P    ++  A++RL AI     LG+G+ LA  DL
Sbjct: 895  FGLSQLYQLRGRVGRAGIQAHAWLFYPGETVLSDQARQRLRAIQEFTQLGSGYQLAMRDL 954

Query: 951  EIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPS 1010
            EIRG G LLG EQSG ME IGF LYME+L+ ++  ++    P ++D     T+++L + +
Sbjct: 955  EIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLQEIRGQDIPQVDD-----TQIDLSLTA 1009

Query: 1011 LLPDDFIPDVNTRLSFYKRIASAKNENELEEIKVELIDRFGLLPDPARNLLDIARLRQQA 1070
             +P D+IPD++ ++S Y+ +ASA+   +L +I  +  DR+G LP  A+ LL +  L+Q A
Sbjct: 1010 FIPADYIPDIDAKMSAYRAVASAQTPADLLQIAADWSDRYGSLPASAQQLLRVMELKQVA 1069

Query: 1071 QKLGIRKLEGNEKGGTIEFAEKNHVDPAW 1099
            + LG  ++    K   I   E     PAW
Sbjct: 1070 KSLGFARIRTESKQHVI--LETPMEAPAW 1096