Pairwise Alignments

Query, 1148 a.a., Transcription-repair coupling factor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 1172 a.a., transcription-repair coupling factor from Rhodopseudomonas palustris CGA009

 Score =  766 bits (1977), Expect = 0.0
 Identities = 450/1149 (39%), Positives = 654/1149 (56%), Gaps = 37/1149 (3%)

Query: 24   GAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFT----DQMVMNLADWETLPYD 79
            G   A L   +A +   P V +    ++  R+    R       D  V+    W+  PYD
Sbjct: 29   GLIIADLARAVAAKPKAPAVSLTVICRDGPRMQQLARSLEFFAPDLEVLQFPAWDCQPYD 88

Query: 80   SFSPHQEIISSRLSTLYQLPSMQRG----VLIVPVNTLMQRVCPHSYLHGHALVMKKGQR 135
              SPH  I++ R++TL +L  +       +++  VN  +QRV     +   AL +  G  
Sbjct: 89   RVSPHAGILAQRVTTLAKLSRLTGSDKPLIVLTTVNAAVQRVPVREIIAAQALSVAPGNV 148

Query: 136  LSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPYRLDFFDDEIDSLRLF 195
            +  D++ A L+  GY     V E GEYA RG +LDLFP G +QP R DFF D+++S+R F
Sbjct: 149  VPMDSIVAWLEHNGYSRASTVREAGEYAVRGGILDLFPAGLDQPVRFDFFGDQLESIRTF 208

Query: 196  DADTQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDAEHIYQQVSKGTLPA 255
            DA+TQRTL  +  ++L+P  EF      I  FR  +   F      + +Y  VS+G    
Sbjct: 209  DAETQRTLHTMRGLDLVPVSEFQLVTETIRRFRMGYVAAFGAPHPDDQLYAAVSEGRRHP 268

Query: 256  GIEYWQPLFFSEPLPPLFSYFPANTLVVNTGSLETSAERFQ--ADTL----ARFENRGVD 309
            G+E+W PLF  E +  LF Y     + +   S + + ERF+  AD         E  G  
Sbjct: 269  GMEHWLPLF-QERMDTLFDYLKGTPVAIEPQSEDAARERFKQIADYYDARREAMEQPGSG 327

Query: 310  PMRPLLPPEALWLRVDELFSELKRWPRLQLKTDHLPEKA-----ANTNLGFQKLPDLA-I 363
             +   LPP+ L+L   E  + L+     +L    LP+       A    G    P+ A  
Sbjct: 328  AIYKPLPPDRLYLTDSEWTARLEGVALARLTPFALPDDTSDVIDAGARAGRNFAPERADS 387

Query: 364  QAQQKAPLDALRKFLESFSGPVIFSVESEGRREALGELLARIK-IAPKRILRLDEAQDAG 422
                   L A    L++    V+ ++ SEG R+ +  +L   K +A   +      Q   
Sbjct: 388  NVNVFETLVAHVYALQAARKKVVIALWSEGSRDRMASMLKDHKLVALTSVNSWRTVQATP 447

Query: 423  R---YLMIGAAEHGFIDTQRNLALICESDLLGERVARRRLDSRRTINPDTLIRNLAELHV 479
            R    L +   E GF +T    A+I E D+LG+R+ R+R  S++    D  I  +  L  
Sbjct: 448  RNETMLAVVGLESGF-ETDA-FAVITEQDVLGDRLVRQRKASKKL---DNFISEVTSLST 502

Query: 480  GQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEES 539
            G  VVH+EHG+GR+ G+ TLE GG   + + L YAND KL++PV ++ L+SRY G    S
Sbjct: 503  GDIVVHVEHGIGRFVGLQTLEVGGAPHDCVELHYANDTKLFLPVENIELLSRY-GSDGTS 561

Query: 540  APLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPF 599
              L KLGG  W   + K   ++R +A EL+ + A+R  +E        + Y  FC  FP+
Sbjct: 562  VELDKLGGSGWQARKAKLKNRIRQIAGELIKVAAERHLREAPKLPIQPQLYDEFCARFPY 621

Query: 600  ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTT 659
            + T DQ  AINA L D+ +   MDRLVCGDVGFGKTEVA+RAAF    + KQVAV+VPTT
Sbjct: 622  DETEDQLAAINAALGDLEKGTPMDRLVCGDVGFGKTEVALRAAFAVALDGKQVAVVVPTT 681

Query: 660  LLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVK 719
            LLA+QH   F +RF  +PV +   SR  SAKE +Q+    A+G  DI++GTH LL   +K
Sbjct: 682  LLARQHAKTFTERFRGFPVNVGQASRLVSAKELSQVKKGIADGTTDIVVGTHALLGKSIK 741

Query: 720  LRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATP 779
             +DLGL+IVDEE  FGV HKE++K +R++V +LTL+ATPIPRTL +AM+G+RDLSIIA+P
Sbjct: 742  FKDLGLVIVDEEQHFGVTHKEKLKQLRSEVHVLTLSATPIPRTLQLAMTGVRDLSIIASP 801

Query: 780  PARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIA 839
            P  RLAV+TFV  +D L++REA+LRE  RGGQ +Y+   ++++ +  + L + VPE ++A
Sbjct: 802  PVDRLAVRTFVAPHDPLMIREALLRERYRGGQAFYVVPRIDDLAEVKDFLDKHVPEMKVA 861

Query: 840  IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899
            + HGQM    +E +M+ F+  +F++L+ TTI+E+G+DIP ANT+I+ RAD FGLAQL+QL
Sbjct: 862  VAHGQMPPAVIEDIMSAFYDGKFDILLSTTIVESGLDIPNANTLIVHRADMFGLAQLYQL 921

Query: 900  RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959
            RGRVGRS  +AYA    P    +T  A++RL+ + SLE LGAGF LA+HDL+IRGAG LL
Sbjct: 922  RGRVGRSKLRAYALFTLPQHN-ITAQAERRLKVLQSLETLGAGFQLASHDLDIRGAGNLL 980

Query: 960  GEEQSGSMETIGFSLYMELLENAVDALKAG--REPSLEDLTSQQTEVELRMPSLLPDDFI 1017
            GEEQSG ++ +GF LY ++LE A+  LKAG   EP  +  + Q   + + MP L+PDDF+
Sbjct: 981  GEEQSGHIKEVGFELYQQMLEEAITNLKAGIVDEPVADRWSPQ---ITIGMPVLIPDDFV 1037

Query: 1018 PDVNTRLSFYKRIASAKNENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRK 1077
             D++ RLS Y+R+A    + E++    EL DRFG LPD  R L  IA ++   ++  + K
Sbjct: 1038 ADLSVRLSLYRRLADLDTDEEIDNFAAELRDRFGPLPDEVRYLFKIAAIKAYCRRANVEK 1097

Query: 1078 LEGNEKGGTIEFAEKNHVDPAWLIGLLQKQPQHFRLDGPTRLKFIQDLSERKTRIDWVRQ 1137
            ++   KG  I F +     P  L+  +++     ++    ++ F Q     + R+     
Sbjct: 1098 VDAGPKGVVITFRDNAFAQPDKLVFFIKRHGDAAKVRPDMKVVFFQVWETPEERLMGTTD 1157

Query: 1138 FMQQLEENA 1146
             ++QL + A
Sbjct: 1158 ILKQLADLA 1166