Pairwise Alignments

Query, 1148 a.a., Transcription-repair coupling factor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 1160 a.a., transcription-repair coupling factor (RefSeq) from Shewanella loihica PV-4

 Score = 1272 bits (3292), Expect = 0.0
 Identities = 646/1141 (56%), Positives = 861/1141 (75%), Gaps = 18/1141 (1%)

Query: 19   LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFTDQM---VMNLADWET 75
            L +LTGAA A  +A++ E+++   +++ PD  +ALRL  E+          VM   D ET
Sbjct: 21   LSQLTGAARAISLAKLCEQYSSMTLVVTPDTPSALRLEAELGYLLAPKSIPVMLFPDRET 80

Query: 76   LPYDSFSPHQEIISSRLSTLYQLPSMQRGVLIVPVNTLMQRVCPHSYLHGHALVMKKGQR 135
            LPYDSFSPHQ+++S RL TL ++PS    ++IVP++TLM ++ P S+L G+ L++ KG  
Sbjct: 81   LPYDSFSPHQDLVSQRLETLSRIPSAGHSLVIVPMSTLMVKLPPQSFLTGNVLLLSKGDN 140

Query: 136  LSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPYRLDFFDDEIDSLRLF 195
               +A+R+QL + GY HV+QV EHGE+A RG+++DLFPMG++ PYR++ FDDE++S+R F
Sbjct: 141  YPLEAVRSQLVNTGYHHVEQVYEHGEFAVRGSIIDLFPMGAQSPYRIELFDDEVESIREF 200

Query: 196  DADTQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVK-RDAEHIYQQVSKGTLP 254
            D +TQR+  E+E+I LLPA EFPT+ AAIE FR ++R  FEV  ++ E IYQ VS+  +P
Sbjct: 201  DPETQRSSGEIESIRLLPAKEFPTNDAAIEGFRQRYRRQFEVVVKEPESIYQMVSRKVMP 260

Query: 255  AGIEYWQPLFFSEPLPPLFSYFPANTLVVNTGSLETSAERFQADTLARFENRGVDPMRPL 314
            AGIE + PLFF E    LF Y P    +V  G LE +A+    +   R+ENR VDP+RPL
Sbjct: 261  AGIESYLPLFFDETAS-LFDYLPGECQLVQVGDLENAAKHHLQEINQRYENRRVDPLRPL 319

Query: 315  LPPEALWLRVDELFSELKRWPRLQLKTDHLPEKAANTNLGFQKLPDLAIQAQQKAPLDAL 374
            LPP+ L+L  +++F   K+ PR  +K +          L  + LP++A   + K PL +L
Sbjct: 320  LPPKDLYLLTEQVFEAFKQLPRFLIKGNEATGTCVEAQL--EALPNIAANHKLKQPLISL 377

Query: 375  RKFLESFSGPVIFSVESEGRREALGELLARIKIAPKRILRLD----EAQDAGRYLMIGAA 430
            ++F    + P++F VESEGRREAL ELLA+I+I P  +  LD    + Q  G  L++   
Sbjct: 378  KEFANGGT-PILFCVESEGRREALLELLAKIEIKPALLDHLDSFSHKPQPFG--LIVAPL 434

Query: 431  EHGFIDTQR---NLALICESDLLGERVAR-RRLDSRRTINPDTLIRNLAELHVGQPVVHL 486
              G I   +   + AL+CE++L G+R+A+ RR D +R ++ D LI++LAEL VGQP+VHL
Sbjct: 435  SQGAIYHPKKGPSWALVCETELFGQRIAQQRRRDKQRQVSQDALIKDLAELKVGQPIVHL 494

Query: 487  EHGVGRYAGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEESAPLHKLG 546
            +HGV  Y G+ TL+ GG+  EYL L YA   KLYVPV+SL+LIS+Y+ GA+++  L+KLG
Sbjct: 495  DHGVALYQGLETLDTGGLVAEYLKLEYAGGDKLYVPVASLNLISQYSVGADDAPQLNKLG 554

Query: 547  GDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQA 606
             ++W++A++KA EK+RDVAAELLD+YA+R A+ G A + DRE+Y  F  SFPFE T DQ 
Sbjct: 555  NESWTKAKRKAIEKIRDVAAELLDVYARRQARPGEACRLDREEYAQFAGSFPFEETVDQE 614

Query: 607  QAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHY 666
             AI+AVL+DMC P++MDRLVCGDVGFGKTEVAMRAAF+AV + KQVA+LVPTTLLAQQHY
Sbjct: 615  TAIDAVLTDMCSPISMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVAILVPTTLLAQQHY 674

Query: 667  DNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKLRDLGLL 726
            +NF+DRFA+WP++IE++SRF++AKEQ  +L +   G++DI+IGTHKLLQS+ K  +LGLL
Sbjct: 675  ENFKDRFADWPIKIEVMSRFKTAKEQQAVLKQLELGQVDIVIGTHKLLQSEAKFENLGLL 734

Query: 727  IVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAV 786
            I+DEEHRFGVR KE+IKA+RA++DILTLTATPIPRTLNMAMSGMRDLSIIATPPA+RLAV
Sbjct: 735  IIDEEHRFGVRQKEKIKALRANIDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAV 794

Query: 787  KTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMR 846
            KTFVREYD   VREA+LREILRGGQVY+L+N VE I+K A  +  L+PEAR+   HGQMR
Sbjct: 795  KTFVREYDDATVREALLREILRGGQVYFLHNSVETIEKRAREIEALLPEARVVTAHGQMR 854

Query: 847  ERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRS 906
            ER+LE+VM+DF+HQ++NVLVCTTIIETGID+P+ANTIIIERAD+FGLAQLHQLRGRVGRS
Sbjct: 855  ERDLEKVMSDFYHQKYNVLVCTTIIETGIDVPSANTIIIERADNFGLAQLHQLRGRVGRS 914

Query: 907  HHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGS 966
            HHQAYA+L+ PHPK MT DA KRLEAI +LEDLGAGF LAT DLEIRGAGELLG+EQSG 
Sbjct: 915  HHQAYAYLMMPHPKRMTKDAIKRLEAIGALEDLGAGFMLATQDLEIRGAGELLGDEQSGH 974

Query: 967  METIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSF 1026
            +  IGF+LYME+LE+AV +LK G+EPSL+ +   Q E++LR+P+LLP+D++ DVN RLS 
Sbjct: 975  ISKIGFTLYMEMLEDAVKSLKEGKEPSLDQMLRGQCEIDLRIPALLPEDYVGDVNIRLSL 1034

Query: 1027 YKRIASAKNENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEGNEKGGT 1086
            YKRIA+      L+E+KVELIDRFGLLP   +NL++++  + QA  LGI K+E + KGG+
Sbjct: 1035 YKRIANCATAQALDELKVELIDRFGLLPQATKNLMEVSLFKHQATALGIAKIEMHAKGGS 1094

Query: 1087 IEFAEKNHVDPAWLIGLLQKQPQHFRLDGPTRLKFIQDLSERKTRIDWVRQFMQQLEENA 1146
            +EF   + VDP ++IGLLQ QPQ++R+DGP++LKF+      K R+  +   + QL ++ 
Sbjct: 1095 LEFNNDHCVDPGFIIGLLQSQPQNYRMDGPSKLKFLMPTETDKDRLALLSLIISQLMQHR 1154

Query: 1147 I 1147
            +
Sbjct: 1155 L 1155