Pairwise Alignments

Query, 1148 a.a., Transcription-repair coupling factor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 1197 a.a., transcription-repair coupling factor (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  631 bits (1628), Expect = 0.0
 Identities = 394/1053 (37%), Positives = 602/1053 (57%), Gaps = 41/1053 (3%)

Query: 89   SSRLSTLYQLPSMQ--RGVLIVPVNTLMQRVCPHSYLHGHALVMKKGQRLSRDALRAQLD 146
            ++R+++LY L   +  RG+ I+ V+ L+ ++ P      H L + +G+ +S + +  Q  
Sbjct: 123  AARMASLYALSRREHPRGI-IISVDNLLPKLPPVDIFEHHELRLARGEDMSPELVLDQAI 181

Query: 147  SAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPYRLDFFDDEIDSLRLFDADTQRTLEEV 206
              G+     V   GE A RG +LD+FP G E+P RL+FF D ++ +RLFDA +QR+L  +
Sbjct: 182  DWGFERAQMVSRPGEAARRGDILDIFPPGYEKPLRLEFFGDTLEDIRLFDATSQRSLASL 241

Query: 207  EAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDAEHIYQQVSK----------GTLPAG 256
            E   LLP       +   E    +W+   ++++D     +Q +           G LP G
Sbjct: 242  EEFRLLPVAPVVGCREYREAAARRWK---QLRKDGVIDGEQAAALARMAEGEVTGLLP-G 297

Query: 257  IEYWQPLFFSEPLPPLFSYFPANTLVVNTGSLETSAERFQADTLARFENRGVDPMRPLLP 316
              Y    +  + LP    +   +   ++T +LE +   ++A    +++   +   RPL+ 
Sbjct: 298  AWYENATWMEDWLPRDAVWLLPDRADLST-ALEAARTNWEALLDRQYDEHRLRQPRPLVL 356

Query: 317  PEALWLRVDELFSELKRWPRLQLKTDH----LPEKAANTNLG-FQKLPDLAIQAQQ--KA 369
             +A   +       +  + RL +  +     LPE+  +     F   P + +   +  + 
Sbjct: 357  RDADEAQAAWRGRSVAHFERLVMGVERTGVDLPERRLHAFRDLFAATPSVPVDEDRPWQR 416

Query: 370  PLDALRKFLESFSGPVIFSVESEGRREALGELLARIKIAPKRILRLDEAQDAGRYLMIGA 429
             + ALR++  S    V+ S  S+  R    +L  +  + P   LR   A D G Y ++  
Sbjct: 417  LVTALRQWT-SERRQVVLSFASDRSRRKFLKLAEQDGVRPN--LRYSPA-DRGLYALVAP 472

Query: 430  AEHGFIDTQRNLALICESDLLGERVARR-RLDSRRTINPDTLIRNLAELHVGQPVVHLEH 488
               G ID   +  L+   D+L  +  R+ R+ +   +  D       +L  G  +VH ++
Sbjct: 473  FRAG-IDLAWDNVLVIGEDVLQPKADRQPRVPTGAFLGLD----KYDDLSPGDLLVHRDY 527

Query: 489  GVGRYAGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEESAPLHKLGGD 548
            GVGR+ G+  ++ GG+  ++L+L YA + +LY+PV  L LI R+ GG +    L KLGG 
Sbjct: 528  GVGRFGGLHRMDLGGVANDFLLLEYAGEDRLYLPVDRLSLIQRFKGGDDSVPSLDKLGGS 587

Query: 549  AWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQA 608
             W   + KA + +  +AA+L+ +YA R   +G+ +    E Y+ F  SF FE TPDQA+A
Sbjct: 588  GWRACKDKARKAIEKIAADLVQMYAYRKVAKGYRYGPLGELYREFEASFGFEETPDQARA 647

Query: 609  INAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDN 668
            I  VL DM +P  MDRLVCGDVGFGKTEVA+RAAF A    +QVA+L PTT+LA+QHY  
Sbjct: 648  IQDVLDDMEKPEPMDRLVCGDVGFGKTEVALRAAFRAAAEGRQVALLCPTTVLAEQHYQT 707

Query: 669  FRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKLRDLGLLIV 728
            FR R A +PV + MLSRF S ++Q ++L  AA G+IDILIGTH+LL  DV+L +LGLL++
Sbjct: 708  FRSRLAGFPVNVGMLSRFVSRQKQKEVLQAAARGQIDILIGTHRLLSDDVQLPNLGLLVL 767

Query: 729  DEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKT 788
            DEE RFGVRHKE++K  R +VD LTLTATPIPRTL ++MSG+R+LS+I T P  R  V T
Sbjct: 768  DEEQRFGVRHKEKLKKFRKNVDALTLTATPIPRTLQLSMSGIRELSVIETAPPERKPVAT 827

Query: 789  FVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRER 848
             + E D   +R+ + REI R GQV++++N V+ +++ AE +  LVP AR+ + HGQM ER
Sbjct: 828  ALIERDQNALRQILEREIAREGQVFWVHNRVQGLERVAEFVRGLVPTARVGMAHGQMGER 887

Query: 849  ELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHH 908
            ELE  M+ F H   +VLVCT I+E+G+D P ANT+I+++A  FGL QL+QLRGRVGRS  
Sbjct: 888  ELEDTMHKFWHGELDVLVCTAIVESGLDFPRANTLIVDQAQMFGLGQLYQLRGRVGRSDR 947

Query: 909  QAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSME 968
            QAYA  +    + +   A++R+  I  L+ LGAGF +A  DL +RGAG +LGE QSG M 
Sbjct: 948  QAYAVFVVSDAERLPEQARQRMRIILELDYLGAGFQVAMEDLRLRGAGNILGEVQSGHMT 1007

Query: 969  TIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYK 1028
             +G  LY+E+LE  V  LK G  P      S + E+ + + + +P+ +I D   RL FYK
Sbjct: 1008 RLGLDLYLEMLEEEVARLK-GAPPR----ESVEPELNIGLAAHIPETYIGDARERLKFYK 1062

Query: 1029 RIASAKNENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEGNEKGGTIE 1088
             ++SA +   L+++++EL DRFG  P   RN L +  L++    L + + + + +   + 
Sbjct: 1063 ALSSAPDAATLQDVEMELRDRFGPCPPELRNFLAVLVLKRFLATLQVVRADIHPERLRLV 1122

Query: 1089 FAEKNHV-DPAWLIGLLQKQPQHFRLDGPTRLK 1120
            + E+  V  P  L+  +  +    RL  P+ L+
Sbjct: 1123 WDERQTVIAPERLVAWVAARQGKARLVPPSTLE 1155