Pairwise Alignments

Query, 1148 a.a., Transcription-repair coupling factor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 1177 a.a., transcription-repair-coupling factor from Marinobacter adhaerens HP15

 Score = 1204 bits (3115), Expect = 0.0
 Identities = 617/1152 (53%), Positives = 816/1152 (70%), Gaps = 21/1152 (1%)

Query: 10   PTKAGDQRQLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFTDQM--- 66
            P++  D R  G+L G++ A  + E A  H G  ++I     +A+RL   +R F       
Sbjct: 20   PSRPADHRTWGQLHGSSEALAICESARAHKGLTLVITRSTADAIRLEQAMRFFLGLPPEE 79

Query: 67   -----------VMNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQRGVLIVPVNTLMQ 115
                       +++L DWETLPYD FSPHQ+IIS R+ TL++LP+   GVL+VP  TLM 
Sbjct: 80   DGPAVSDDGLELLSLPDWETLPYDLFSPHQDIISRRIRTLHRLPATSHGVLVVPARTLMH 139

Query: 116  RVCPHSYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175
            R+ P +YL G+ L+++ GQ L  ++ R QL++AGYRH + V EHGEYA RGA+LD+FPMG
Sbjct: 140  RLPPVNYLQGNTLLLEVGQSLDIESWRMQLEAAGYRHAENVYEHGEYAVRGAILDIFPMG 199

Query: 176  SEQPYRLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTF 235
            + QP+R+D FDDEI++LR FD +TQR+++ +E I LLPA EFP  K A   FRS+W + F
Sbjct: 200  ASQPFRIDLFDDEIETLRTFDPETQRSIDRIERIELLPAFEFPWHKEARSGFRSRWFEQF 259

Query: 236  EVKRDAEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLVVNTGSLETSAERF 295
                    IYQ V+ G  P GIEY+ PLFF E    LF Y P  T V     L  +   F
Sbjct: 260  PDADKDTPIYQDVTHGITPPGIEYYLPLFFDETAT-LFDYLPGATHVFTADGLNDAVSHF 318

Query: 296  QADTLARFENRGVDPMRPLLPPEALWLRVDELFSELKRWPRLQLKTDHLPEKAANTNLGF 355
             ++T  R+E+R  D +RP+LPP+ L+L+ +ELF +LK +PR+ +  +   + A + N   
Sbjct: 319  DSETRNRYEDRRHDRLRPILPPKRLFLQQEELFGQLKAFPRVTVSAE-TKDAAGSVNCPT 377

Query: 356  QKLPDLAIQAQQKAPLDALRKFLESFSGPVIFSVESEGRREALGELLARIKIAPKRILR- 414
              LPD+A+  +   P   L++FL  F G V+   ES GRREAL E L    +  K +   
Sbjct: 378  TTLPDIAMDGRAADPAGRLKRFLGEFDGHVLICAESSGRREALMENLGEQGVELKTLSGW 437

Query: 415  ---LDEAQDAGRYLMIGAAEHGFIDTQRNLALICESDLLGERVARRRLDSRRTINPDTLI 471
               LD+ +++   + I   E G +  + ++ALI E+ L GERV +RR   + T   D   
Sbjct: 438  QAFLDD-KESSVAITIAPMEQGLVLPEHSVALITETALFGERVLQRRRREKPTETDDAGF 496

Query: 472  RNLAELHVGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISR 531
            R+L+EL +G PVVH++HGVGRY G+ T+   G   E+LML YA  +KLYVPVSSLHLISR
Sbjct: 497  RDLSELRIGAPVVHIDHGVGRYLGLETITVEGEASEFLMLGYAGGSKLYVPVSSLHLISR 556

Query: 532  YAGGAEESAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQ 591
            YAG   E APLHKLG D WS A+QKA EK+RD AAELLD+YA+R A++GF+F+  +E Y+
Sbjct: 557  YAGNDTEHAPLHKLGTDRWSTAKQKALEKIRDTAAELLDVYARREARKGFSFEDPKEAYR 616

Query: 592  LFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQ 651
             F   FPFE TPDQ  AI +V  DM     MDRLVCGDVGFGKTEVAMRAAFLA  + KQ
Sbjct: 617  AFAAGFPFEETPDQQVAIQSVFEDMTSEQPMDRLVCGDVGFGKTEVAMRAAFLATWSGKQ 676

Query: 652  VAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTH 711
            VAVLVPTTLLAQQHY++FRDRF++ PV++E+LSRFR+A + ++ L     G+ DI+IGTH
Sbjct: 677  VAVLVPTTLLAQQHYESFRDRFSDTPVQVELLSRFRTAGQTSKALEAVENGRADIVIGTH 736

Query: 712  KLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMR 771
            KLLQ D+K ++LGL+I+DEEHRFGV+ KER+KA+RA+VD+L LTATPIPRTLNMAM  +R
Sbjct: 737  KLLQGDIKFKNLGLVIIDEEHRFGVQQKERLKALRAEVDMLNLTATPIPRTLNMAMGHLR 796

Query: 772  DLSIIATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAE 831
            DLSIIATPPARRL+VKTFVR+ D+ +V+EAILREILRGGQVY+L+NDV  I+K AE L  
Sbjct: 797  DLSIIATPPARRLSVKTFVRQKDNAMVKEAILREILRGGQVYFLHNDVATIEKTAEDLRS 856

Query: 832  LVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHF 891
            L+PEAR+ + HGQMRER+LE++M+DF+H+RFNVLVCTTIIETGID+P+ANTIIIERAD F
Sbjct: 857  LIPEARVGVAHGQMRERDLEKIMSDFYHKRFNVLVCTTIIETGIDVPSANTIIIERADKF 916

Query: 892  GLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLE 951
            GLAQLHQLRGRVGRSHHQAYA+LLTP PK++T DA+KRL+AI+  +DLGAGF LATHDLE
Sbjct: 917  GLAQLHQLRGRVGRSHHQAYAYLLTPPPKSITADAKKRLDAISEAQDLGAGFMLATHDLE 976

Query: 952  IRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSL 1011
            IRGAGELLGEEQSG +E+IGF+LYM+LL+ AV A++ GR P+ +   S  TE+ LR+P+L
Sbjct: 977  IRGAGELLGEEQSGQIESIGFTLYMQLLDEAVKAIREGRTPNADLPLSHGTEMNLRIPAL 1036

Query: 1012 LPDDFIPDVNTRLSFYKRIASAKNENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQ 1071
            +P+D++PDV+ RL  YKRIAS  +   L+E++VE+IDRFGLLPDPA+NL+    LR +A+
Sbjct: 1037 IPEDYLPDVHNRLMLYKRIASVDSPEALKELQVEMIDRFGLLPDPAKNLIRQTELRLRAE 1096

Query: 1072 KLGIRKLEGNEKGGTIEFAEKNHVDPAWLIGLLQKQPQHFRLDGPTRLKFIQDLSERKTR 1131
             LGI K++  ++   +EF     VDP  L+  +Q  P  +RL+G    +F    +    +
Sbjct: 1097 ALGIVKVDAGKEWARLEFGSSTPVDPLVLVKKVQSAPDQYRLEGANSFRFRLKDATTGGK 1156

Query: 1132 IDWVRQFMQQLE 1143
            +D + + + +LE
Sbjct: 1157 LDGISRMLGELE 1168