Pairwise Alignments

Query, 1148 a.a., Transcription-repair coupling factor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 1160 a.a., transcription-repair coupling factor (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  738 bits (1906), Expect = 0.0
 Identities = 437/1104 (39%), Positives = 632/1104 (57%), Gaps = 34/1104 (3%)

Query: 28   ATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFTDQM-VMNLADWETLPYDSFSPHQE 86
            A +V   A R  G  V +A D +    +   +     Q+ V+    W+ LPYD  SP+ E
Sbjct: 21   AQIVLREASRPDGQAVFVARDDKRMAAMAAALAVTAPQIPVLRFPGWDCLPYDRSSPNPE 80

Query: 87   IISSRLSTLYQLPSMQRG--VLIVPVNTLMQRVCPHSYLHGHALVMKKGQRLSRDALRAQ 144
            I ++R++TL  L     G  VL+  ++ + QRV   + L   +   + G R+   ALR  
Sbjct: 81   ISATRMATLAALAHGVPGPFVLLTTLSAVTQRVPARATLAEASFSAQVGGRIDEAALRQF 140

Query: 145  LDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPYRLDFFDDEIDSLRLFDADTQRTLE 204
            L   G+     V E G+YA RG ++D+FP G   P RLD F D +D  R FDA TQRT E
Sbjct: 141  LTRMGFVQAPTVTEPGDYAIRGGIIDIFPPGQSGPVRLDLFGDVLDGARRFDAATQRTTE 200

Query: 205  EVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDAEHIYQQVSKGTLPAGIEYWQPLF 264
            +++AI L P  E   D AAI  FR  +R  F      + +Y+ VS G   AG+E+W P F
Sbjct: 201  KLDAIELAPVSEIILDPAAITRFRQSYRIEFGAAGTDDPLYEAVSAGRKHAGMEHWLP-F 259

Query: 265  FSEPLPPLFSYFPANTLVVNT-------GSLETSAERFQADTLARFENRGVDPMRPLLPP 317
            F + L  L  Y P  +L+++           E   ++++    A  +   +  +    PP
Sbjct: 260  FHDRLETLLDYVPEASLILDDQFEAMHLSRWEGIKDQYETRRHALAQKGQMGTVYKPAPP 319

Query: 318  EALWLRVDELFSELKRWPRLQLKTDHLPEKAANTNLGFQKLPDLAIQAQQKAP--LDALR 375
            E L++   +  + L     LQL           T+ G +   + A + Q +A    +AL 
Sbjct: 320  ETLYIPPADETALLATKRTLQLSVLPSASGPGVTDAGGRIGRNFAPERQSQATGLFEALA 379

Query: 376  KFL--ESFSGPVIFSVESEGRREALGELLARIKIAP-KRILRLDEAQDA--GRYLMIGAA 430
              +  +  +  V+ +  SEG RE L  LL    ++    I RL +  +   G +L++ A 
Sbjct: 380  THITEKRKTSQVVIASWSEGARERLRGLLEDQDLSGLTEIARLSDIPEGTGGVHLLVWAL 439

Query: 431  EHGFIDTQRN---LALICESDLLGERVARRRLDSRRTINPDTLIRNLAELHVGQPVVHLE 487
            + GF         L +I E D+LG+R+ R     RR  N    ++    L  G  VVH++
Sbjct: 440  DEGFEGPDHRSTRLTVISEQDVLGDRLIRTTKRKRRAEN---FLQEATSLSAGDLVVHVD 496

Query: 488  HGVGRYAGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEESAPLHKLGG 547
            HGVG + G+ T+ A G   E L+L YA   +LY+PV ++ L+SR+    +E   L KLGG
Sbjct: 497  HGVGAFKGLETVTAMGAPHECLLLEYAGGDRLYLPVENIELLSRFG---QEIGMLDKLGG 553

Query: 548  DAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQ 607
             AW   + K  E++R++A +L+ I A+RA +     +   + ++ F   FP+  T DQ  
Sbjct: 554  GAWQAKKAKLKERIREMADKLIRIAAERALRRAPMLEPPPDMWEAFSARFPYTETDDQLS 613

Query: 608  AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYD 667
            AI  V+ D+     MDRL+CGDVGFGKTEVAMRAAF+A  +  QVAV+ PTTLLA+QHY 
Sbjct: 614  AIEDVVHDLAAGTPMDRLICGDVGFGKTEVAMRAAFIAALSGVQVAVIAPTTLLARQHYK 673

Query: 668  NFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKLRDLGLLI 727
            +F DRF  +P+ +  LSRF  AK         A G +DI++GTH LL   V+  +LGLLI
Sbjct: 674  SFADRFRGFPLEVRPLSRFVPAKAAADTRKGLAAGSVDIVVGTHALLAKGVRFHNLGLLI 733

Query: 728  VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787
            +DEE RFGV HKER+K +R+DV +LTLTATPIPRTL +++SG+RDLSII TPP  RL+++
Sbjct: 734  IDEEQRFGVGHKERLKELRSDVHVLTLTATPIPRTLQLSLSGVRDLSIIGTPPVDRLSIR 793

Query: 788  TFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRE 847
            T+V E+D + +REA+LRE  RGGQ +++   +++I +    L + VPE    + HGQM  
Sbjct: 794  TYVSEFDPVTLREALLREHYRGGQSFFVVPRIKDIPEIEAFLRDQVPEVSFVVAHGQMAA 853

Query: 848  RELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSH 907
             EL+  MN F+  +++VL+ TTI+E+G+DIPTANT+II RAD FGL+QL+Q+RGRVGR+ 
Sbjct: 854  GELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMIIHRADMFGLSQLYQIRGRVGRAK 913

Query: 908  HQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSM 967
             +AYA+L T     +T  A+KRL  + SL+ LGAGF LA+ DL+IRGAG LLGE QSG  
Sbjct: 914  TRAYAYLTTKPRMKLTPAAEKRLRVLGSLDSLGAGFTLASQDLDIRGAGNLLGEAQSGQF 973

Query: 968  ETIGFSLYMELLENAVDALKAGREPSLEDLTSQQ----TEVELRMPSLLPDDFIPDVNTR 1023
              +GF LY  +LE A+  +K+G   SLE LT        ++ L +P L+P+ ++PD++ R
Sbjct: 974  REVGFELYQSMLEEAIGKIKSG---SLEGLTDDDGQWAPQINLGVPVLIPEAYVPDLDVR 1030

Query: 1024 LSFYKRIASAKNENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEGNEK 1083
            L  Y+R++    + ELE    ELIDRFG LP     LL I R++   +K GI KL+G  K
Sbjct: 1031 LGLYRRLSQLTTKVELEGFAAELIDRFGKLPKEVNTLLLIVRIKAMCKKAGIAKLDGGPK 1090

Query: 1084 GGTIEFAEKNHVDPAWLIGLLQKQ 1107
            G T++F      +PA L+  +  Q
Sbjct: 1091 GATVQFHNDKFANPAGLVKFINDQ 1114