Pairwise Alignments

Query, 1148 a.a., Transcription-repair coupling factor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 1153 a.a., transcription-repair coupling factor from Cupriavidus basilensis FW507-4G11

 Score = 1028 bits (2658), Expect = 0.0
 Identities = 557/1163 (47%), Positives = 760/1163 (65%), Gaps = 32/1163 (2%)

Query: 1    MPEKQR----YTLP-TKAGDQRQLGELTGAACATLVAEIAERHAGPVVLIAPDMQNAL-- 53
            MPE  R      LP  KAG +  +  L G+A A  +A  A +H   V ++A    NA+  
Sbjct: 1    MPEANRPVPFANLPLVKAGQRYTVSGLPGSADALALAAYASQHRERVPMLAVVCANAVDA 60

Query: 54   -RLHDEIRQFTDQM-VMNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQRGVLIVPVN 111
             RL +EI  F   + V  L DWETLPYDSFSPHQ+++S RL+TL+ +   Q  +++VP  
Sbjct: 61   QRLAEEIPWFAPSLRVRLLPDWETLPYDSFSPHQDLVSERLATLHDIQGGQCDIMLVPAQ 120

Query: 112  TLMQRVCPHSYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDL 171
            T + R+ P ++L  +    K+G++L   AL+AQ   AGY HV  VM  GEY+ RG L+DL
Sbjct: 121  TALYRLAPPAFLAAYTFFFKQGEKLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDL 180

Query: 172  FPMGSEQPYRLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEFPTDKAAIELFRSQW 231
            FPMGS  PYR+D F +EI+++R FD DTQR+L  V+ + LLP  EFP D AA   FR +W
Sbjct: 181  FPMGSPLPYRIDLFGNEIETIRAFDPDTQRSLYPVKEVRLLPGREFPLDDAARTAFRGRW 240

Query: 232  RDTFEVKRDAEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLVVNTGSLETS 291
            R+ FE       IY+ +  G   AGIEY+ PLFF E    +F Y PAN+ +   G +  +
Sbjct: 241  RELFEGDPSKSTIYKDIGNGVPSAGIEYYLPLFF-ESSATVFDYLPANSQLAFAGDVPDA 299

Query: 292  AERFQADTLARFENRGVDPMRPLLPPEALWLRVDELFSELKRWPRLQLKTDHLPEKAANT 351
              RF ADT  R+     D  RPLLPP AL+L  ++ F+  K   RL L+         +T
Sbjct: 300  IRRFWADTTQRYNFMRHDRERPLLPPAALFLSEEQFFTGAKPLARLVLQGT----ATGDT 355

Query: 352  NLGFQKLPDLAIQAQQKAPLDALRKFLESFSGPVIFSVESEGRREALGELLARIKIAPKR 411
                + LPD+++  + + PL  L   L      V+   +S GRRE L +L     + P+ 
Sbjct: 356  VPLAESLPDVSVNRRAEDPLVNLEALLLKKDRRVLMCADSAGRRETLLQLFGESGLRPQP 415

Query: 412  ILRLDE-----AQDAGRYLMIGAAEHGFIDTQRN----LALICESDLLG---ERVARRRL 459
            I   D+     A D+   +++   + GF          LA + E++L      R  RR+ 
Sbjct: 416  I---DDYAAFLAGDSHFSIVVAPLQSGFAVPSAQGIEPLAFVTEAELYAGTARRTGRRKQ 472

Query: 460  DSRRTINPDTLIRNLAELHVGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYANDAKL 519
            +    +  D+++R+LAEL +G PVVH EHG+GRY G+ +L+ G  + E+L L Y   +KL
Sbjct: 473  EQASAV--DSMVRDLAELKIGDPVVHSEHGIGRYQGLVSLDLGQGEEEFLHLDYEKGSKL 530

Query: 520  YVPVSSLHLISRYAGGAEESAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKE 579
            YVPV  LH+ISRY+G   ++APLH LG   W RA+++AA+++RD AAELL++YA+RA ++
Sbjct: 531  YVPVHQLHVISRYSGADPDTAPLHSLGSGQWDRAKRRAAQQIRDTAAELLNLYARRALRQ 590

Query: 580  GFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAM 639
            G AF+   + Y+ F +SF FE TPDQA AI AV++DM     MDRLVCGDVGFGKTEVA+
Sbjct: 591  GHAFELTPKDYEKFAESFGFEETPDQAAAIAAVIADMTSGKPMDRLVCGDVGFGKTEVAL 650

Query: 640  RAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEA 699
            RAAF+AV   KQVA+L PTTLLA+QH+ N  DRFA WPVRI  LSRF++ KE    + + 
Sbjct: 651  RAAFVAVMGGKQVAILAPTTLLAEQHFQNLSDRFAEWPVRIVELSRFKTKKEIDGAIKQI 710

Query: 700  AEGKIDILIGTHKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPI 759
             +G  DI+IGTHK+L  DVK + LGL+++DEEHRFGVR KE +K +RA+VD+LTLTATPI
Sbjct: 711  NDGTADIVIGTHKMLSDDVKFQRLGLVVIDEEHRFGVRQKEMLKTLRAEVDVLTLTATPI 770

Query: 760  PRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDV 819
            PRTL MA+ G+RD S+IAT P +RLA+KTFVR  +  VVREAILRE+ RGGQVY+L+N+V
Sbjct: 771  PRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEDGVVREAILRELKRGGQVYFLHNEV 830

Query: 820  ENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879
            + I+    +LAELVPEARIA+ HGQM ERELERVM DF  +R N+L+CTTIIETGID+PT
Sbjct: 831  DTIENKRAKLAELVPEARIAVAHGQMHERELERVMRDFVARRDNILLCTTIIETGIDVPT 890

Query: 880  ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939
            ANTI+I RAD FGLAQLHQLRGRVGRSHHQAYA++L    + ++  AQ+RLEAI  +E+L
Sbjct: 891  ANTILIHRADKFGLAQLHQLRGRVGRSHHQAYAYMLVHDVEGLSKLAQRRLEAIQQMEEL 950

Query: 940  GAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTS 999
            G+GF LA HDLEIRGAGE+LG++QSG +  IGF LY ++L  AV +LKAG+EP L    +
Sbjct: 951  GSGFYLAMHDLEIRGAGEVLGDKQSGEIHEIGFQLYTDMLNAAVKSLKAGKEPDLMAPLA 1010

Query: 1000 QQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKNENELEEIKVELIDRFGLLPDPARN 1059
              TE+ L  P+LLP D+  DV+ RLS YKR+A+ +    +++I+ ELIDRFG LP  A+ 
Sbjct: 1011 VTTEINLGTPALLPSDYCTDVHERLSLYKRLANCEAAERVDDIQEELIDRFGRLPPQAQA 1070

Query: 1060 LLDIARLRQQAQKLGIRKLEGNEKGGTIEFAEKNHVDPAWLIGLLQKQPQHFRLDGPTRL 1119
            L++  RLR  A  LG+RK++ ++   +++F     +D   +I L+QK  +H +L G  +L
Sbjct: 1071 LIETHRLRIAAVPLGVRKIDASDAAISMQFLPNPPIDAMKIIDLVQKN-RHIKLAGQDKL 1129

Query: 1120 KFIQDLSERKTRIDWVRQFMQQL 1142
            +    + +   R   ++  ++QL
Sbjct: 1130 RIEAKMPDVAVRAQTIKHTLRQL 1152