Pairwise Alignments

Query, 553 a.a., Flagellar hook-associated protein FlgK from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 727 a.a., hypothetical protein (NCBI) from Rhodospirillum rubrum S1H

 Score =  108 bits (271), Expect = 5e-28
 Identities = 132/549 (24%), Positives = 214/549 (38%), Gaps = 66/549 (12%)

Query: 5   INHAMSGLNAAQAALNTVSNNINNYNVAGYTRQTTILAQANSTLGAGGWIGNGVYVSGVQ 64
           ++  +SGL  AQ  L+ VS+N+ N N  GYTR+   +    S +  G   G GV    + 
Sbjct: 7   LSAGISGLQTAQKGLDLVSHNLANINTPGYTRK---IFNPESVVLNGS--GVGVQTGTIA 61

Query: 65  REYDAFITNQLRGAQNQSSGLTTRYEQMSKIDNLLADKSS--SLSGSLQSFFTSLQTLVS 122
           R  D  +   LR    + +   T+     ++ +L    +S  S+S +L +F     TL  
Sbjct: 62  RRVDEGLNRDLREELAKYTEYKTKASYYQRMQDLFGKPASNNSISHNLTAFGQQFDTLAL 121

Query: 123 NAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQ 182
             +    + A +  A+ L +QF T    L+      +  I  +VA++N + K I  LND+
Sbjct: 122 ETDKSTQQMATVRSAQELTSQFNTISTRLQQMRLTADQDIAGAVAEVNGHLKNIDTLNDE 181

Query: 183 ISRMTGVGAGASPNDLLDQRDQLVSELNKIVGVEVSVQDGGTYNLTMANGYTLVQGSTAR 242
           I+   GV  G    DL D+RD  V +L ++V V    + GG   +    G TL+      
Sbjct: 182 IT--LGVATGRDVTDLQDKRDLEVQQLTELVDVTTFERPGGALVVYTKGGSTLLDAD--- 236

Query: 243 QLAAVPSSADPTRTTVAYVDEAAGNIEIPE-------KLLNTGSLGGLLTFRSQDLDQTR 295
               +P S   + +  A+  +  G+              +  G L  L+  R + +   +
Sbjct: 237 ---PIPVSFTASSSVTAWDSKGGGDFSAISVGGSDITGEIGAGKLAALIDMRDKTVPAYQ 293

Query: 296 NTLGQLALAFADAFNAQHTKGYD----ADGNKGKDFFSIGSPVVYSNSNNADKTVSLTAK 351
           + + +LA  F+D+ N  H +G      A+   G   F   +    + +      V++T  
Sbjct: 294 SQMDELAGKFSDSINQIHNRGTSQPTIANSYSGTTTFIAPATQTMALTTG---DVAITLF 350

Query: 352 VVDSTKVQATDYK----IVFDGTDWQVTRTADNTTF-----------TATKDADGKLEI- 395
             D T+   T  K     V  G D     TA  T             TAT DA+GK++I 
Sbjct: 351 NADGTQKATTTLKTIVPAVATGEDISTVTTAIQTWLNSGTGGGLTGATATVDANGKVQIK 410

Query: 396 -----------DGLKVTVGTGAQKNDSFLLKPVSNAIVDMNVK------VTNEAEIAMAS 438
                      D    T G+ A  + +       N   D  V         N+  +A   
Sbjct: 411 LGTNTASLAFRDQASTTAGSTA-GDVTIAYDADGNGTTDQTVSGFANFLGLNDMFVANRG 469

Query: 439 ESKLDPDVDTGDSDNRNGQALLDLQNSNVVGGNK--TFNDAYATLVSDVGNK-TSTLKTS 495
           +   D DV   +     G AL    ++N  GG    T   A    + D+  K  S    S
Sbjct: 470 QWMADSDVKAQNWTPNVGGALTFYDSNNPPGGTAIGTLTIAPNETLKDIALKINSDTALS 529

Query: 496 STTQANVVK 504
           +  +A VV+
Sbjct: 530 AKLEAEVVQ 538



 Score = 52.4 bits (124), Expect = 6e-11
 Identities = 56/245 (22%), Positives = 107/245 (43%), Gaps = 25/245 (10%)

Query: 320 DGNKGKDFFSIGSPVVYSNSNNADKTVSLTAKVVDSTKVQATDYKIVFDGTDWQVT---R 376
           D N      +IG+  +  N    D  + + +    S K++A   ++V DG  +++    R
Sbjct: 494 DSNNPPGGTAIGTLTIAPNETLKDIALKINSDTALSAKLEA---EVVQDGDGYRLRIKDR 550

Query: 377 TADNTTFTATKDAD-GKLEIDGLKVT-VGTGAQKNDSFLLKPVSNAIVDMNVKVTNEAEI 434
              +   T T     G +E  GLK +  G   Q         V+ +++D + +++  A +
Sbjct: 551 AGKDMVITQTAGVGTGLIEQLGLKDSKAGLSGQLR-------VNQSLLDDSSRISRGAVL 603

Query: 435 AMASESKLDPDVDTGDSDNRNGQALLDLQNS-------NVVGGNKTFNDAYATLVSDVGN 487
             +   +    +  GD+   N Q     Q +        V  G ++F+D  A  +S   +
Sbjct: 604 FNSDTGQYY--ISAGDNTTAN-QLAKSFQTAVSFDAAGGVTTGARSFSDYAALTLSQNAS 660

Query: 488 KTSTLKTSSTTQANVVKQLYKQQQSVSGVNLDEEYGNLQRYQQYYLANAQVLQTANALFD 547
           + S + T+ + Q+ +   L  +   +S VN+DEE   L  ++Q Y A+A+V+  A  + D
Sbjct: 661 EASAVATTVSYQSQLADTLQLKSAEISAVNMDEELSQLLVWEQMYRASAKVISAAADMLD 720

Query: 548 ALLNI 552
            L +I
Sbjct: 721 VLNSI 725