Pairwise Alignments

Query, 577 a.a., Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 613 a.a., single-stranded-DNA-specific exonuclease RecJ from Rhodopseudomonas palustris CGA009

 Score =  291 bits (745), Expect = 5e-83
 Identities = 209/586 (35%), Positives = 325/586 (55%), Gaps = 34/586 (5%)

Query: 9   RREADETAELPA-----DLPPLLRRLYASRGVRSARE---LERSVKGMLPWQ-QLSGIDN 59
           R +A  TA+  A      LP +L R+ A RGV   +    LE +++ ++P    L+ ++ 
Sbjct: 31  RLDARATAKAQAMVQRYQLPEMLARVLAGRGVEIDQVEDFLEPTIRKLMPDPASLTQMEA 90

Query: 60  AVEILYNAFREGTRIIVVGDFDADGATSTALSVLGMRALGCDNISYLVPNRFEDGYGLSP 119
             + + +A   G ++ + GD+D DGATS+AL    +R  G D + + +P+R  +GYG + 
Sbjct: 91  GAKRIADAASRGEKVAIFGDYDVDGATSSALLAWHLRHCGLDPLIH-IPDRIFEGYGPNI 149

Query: 120 EVVDQAKARGAQLIVTVDNGISSHAGVAHAKTLGIPVIVTDHHLPGDTLPDAEAIINPNL 179
           + +     +GA L++TVD G +S   +A A+ LG+ V+V DHH  GD LPD +A+INPN 
Sbjct: 150 DAIRMLAGKGATLLITVDCGTTSLEPLAEARRLGMSVVVIDHHQCGDELPDVDALINPNR 209

Query: 180 RDCEFPSKSLAGVGVAFYLMLALRTFLRDKG-WFDERNIAPPNLAELLDLVALGTVADVV 238
            D       LA VG+    ++A+   LR +G W  ER    PNL ++L  VALGTVADV 
Sbjct: 210 PDDLSGLGHLAAVGLVLMTLVAVNRELRHRGFWTTER--PEPNLLDMLHHVALGTVADVA 267

Query: 239 PLDANNRILTWQGLSRIRAGKCRPGIKALLEIS--NRDPQQLAASDLGFALGPRLNAAGR 296
           PL   NR    +GL  +R  +   G  AL+++S  N  P+   A  LGF LGPR+NA GR
Sbjct: 268 PLVGLNRAFVAKGLIAMRR-RDHVGHTALMDVSRLNGPPE---AWHLGFMLGPRINAGGR 323

Query: 297 LDDMSVGVALLLCDNLGEARVLASELDALNQTRKEIEQGMQAEALILCEKLERSSETLPG 356
           +    +GV LLL  ++ EA  +A+ELD LN  R+EIEQ  +AEA    E +        G
Sbjct: 324 IGRADLGVRLLLESDVSEAARIAAELDRLNSERREIEQ--KAEAQAEAEAMASLGLEDKG 381

Query: 357 GLAMYHPE-WHQGVVGILASRIKERFHRP--VIAFAPAGDGTLKGSGRSIQGLHMRDALE 413
            + +   E WH GVVG++ASR+KE+F RP   IA  P G GT  GSGRSI G+ +  A+ 
Sbjct: 382 AVIVTASEGWHPGVVGLVASRLKEKFGRPSFAIALEPGGIGT--GSGRSISGVDLGKAVR 439

Query: 414 RLDTLYPDLMIKFGGHAMAAGLSLEEHKFEQFQQRFGELVTEWLDPALLQGEVISDGPLS 473
           +   ++  L++K GGHAMAAG++L + +  +F+      +   +  +    E+  DG +S
Sbjct: 440 Q--AVHDGLLLKGGGHAMAAGVTLRKERLAEFRAWLETTLAGDVAKSRHVNELYIDGAVS 497

Query: 474 AAEMSMEVAQLLRDAGPWGQMFPEPLFD-GRFRLLQQRLVGERHLKVMVEPVGGGPLLDG 532
           A  ++ ++A  L  AGP+G   PEP+      +L+    VG+ HL++  +  G G +++G
Sbjct: 498 ARGVTTDLAATLNRAGPFGAGNPEPIVALPAHQLIYADEVGQAHLRLRFK-AGDGAIVNG 556

Query: 533 IAFNID----TTCWPDNGVREVELAYKLDINEFRGNRSLQIIIDDI 574
           IAF            +N  + + +A  L ++ ++G   +Q+ + D+
Sbjct: 557 IAFRSVGQKLGNALTENRGQTLHVAGSLSVDRWQGAERVQLRVIDV 602