Pairwise Alignments

Query, 388 a.a., Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 373 a.a., conserved hypothetical protein TIGR00048 (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  567 bits (1461), Expect = e-166
 Identities = 274/368 (74%), Positives = 319/368 (86%), Gaps = 1/368 (0%)

Query: 19  ETKINLLDLNRQQMREFFKNLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEV 78
           E KINLLDL+R+ MR  F +LGEKPFRADQ+MKW+YH+   +F+EMT+INKVLR KL   
Sbjct: 3   EKKINLLDLDRKAMRALFADLGEKPFRADQLMKWIYHFGVSDFEEMTNINKVLRQKLAAR 62

Query: 79  AEIRAPEVVEEQRSSDGTIKWAIAVGD-QRVETVYIPEDDRATLCVSSQVGCALECKFCS 137
            EI APE+   Q+S+DGTIK+AI VG+ Q VETVYIPEDDRATLCVSSQVGCALEC FCS
Sbjct: 63  CEIVAPEISGYQKSADGTIKFAIHVGEGQEVETVYIPEDDRATLCVSSQVGCALECTFCS 122

Query: 138 TAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAME 197
           TAQQGFNRNL VSEI+GQ+WR +  +G AK TG+RPITNVVMMGMGEPLLNL NV+PAM+
Sbjct: 123 TAQQGFNRNLTVSEIVGQIWRVSHFLGFAKETGERPITNVVMMGMGEPLLNLANVIPAMD 182

Query: 198 IMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKYN 257
           IMLDDFGF LSKRRVTLSTSGVVPALDKLGD +DVALA+S+HAPND +RD +VP+NKKY 
Sbjct: 183 IMLDDFGFSLSKRRVTLSTSGVVPALDKLGDALDVALAVSIHAPNDELRDILVPVNKKYP 242

Query: 258 IETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKETPCKINLIPWNP 317
           ++ FL  +RRY+ KSNAN+GRVT+EYVMLDH+ND TE AH+LA+L+K+TPCK+NLIP+NP
Sbjct: 243 LQEFLAGIRRYIAKSNANRGRVTVEYVMLDHINDSTEQAHELAQLMKDTPCKVNLIPFNP 302

Query: 318 FPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKR 377
           +PG+PYGRSSNSRIDRFSKVLM YG T IVRKTRGDDIDAACGQLAGD+ DRTKR  +KR
Sbjct: 303 YPGSPYGRSSNSRIDRFSKVLMEYGLTVIVRKTRGDDIDAACGQLAGDIRDRTKRLAKKR 362

Query: 378 MQGEVIDI 385
           MQ   I +
Sbjct: 363 MQENQISV 370