Pairwise Alignments

Query, 388 a.a., Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 406 a.a., radical SAM enzyme, Cfr family (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  306 bits (783), Expect = 9e-88
 Identities = 169/370 (45%), Positives = 227/370 (61%), Gaps = 17/370 (4%)

Query: 21  KINLLDLNRQQMREFFKNLG----EKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLK 76
           K NL+ L R ++ E     G    +   R +Q+ +W+Y     +F++MT++ K  R  L 
Sbjct: 35  KRNLVGLTRPELAEALAAAGTPEKQVKMRVNQIWQWLYERGVRDFNDMTNLAKPYRALLA 94

Query: 77  EVAEIRAPEVVEEQRSSDGTIKWAIAV-GDQRVETVYIPEDDRATLCVSSQVGCALECKF 135
           +  EI  PEVV    S DGT K+ + + G   VE VYIPE+DR TLCVSSQVGC L C F
Sbjct: 95  DQFEIAVPEVVSRHVSEDGTRKYLVRIAGGHEVEVVYIPEEDRGTLCVSSQVGCTLTCSF 154

Query: 136 CSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAKVTGQRP------ITNVVMMGMGEPLLNL 189
           C T  Q   RNL   EI+GQ+  A   +G   + G+ P      ++N+V+MGMGEPL N 
Sbjct: 155 CHTGTQKLVRNLTAGEIVGQIMIARDDLGEWPLPGRNPKNETRLLSNIVLMGMGEPLYNF 214

Query: 190 TNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEI 249
             V  AM+I +D  G  LS+RR+TLSTSGVVP + +  + I   LA+S HA  D +RD++
Sbjct: 215 EAVRDAMKIAMDPEGISLSRRRITLSTSGVVPEIARTAEEIGCMLAVSFHATTDEVRDKL 274

Query: 250 VPINKKYNIETFLGAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKETPCK 309
           VPINK++NI T L A+R Y + SN+   R+T EYVML  VND  E A +L EL+K  P K
Sbjct: 275 VPINKRWNIATLLDALRDYPKASNSE--RITFEYVMLKGVNDSDEDARRLVELIKGIPAK 332

Query: 310 INLIPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVIDR 369
           INLIP+N +PGAPY RSSN+RI  F+ ++   G+ + +R  RG+DI AACGQL       
Sbjct: 333 INLIPFNEWPGAPYERSSNNRIRAFADIIYKAGYASPIRTPRGEDIMAACGQLK----SA 388

Query: 370 TKRTLRKRMQ 379
           T+R  + R Q
Sbjct: 389 TERARKSRAQ 398