Pairwise Alignments

Query, 300 a.a., Tyrosine recombinase XerC from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

 Score =  173 bits (439), Expect = 4e-48
 Identities = 109/300 (36%), Positives = 169/300 (56%), Gaps = 9/300 (3%)

Query: 5   ALSQD---VSRFLRYLGVERQLSPITLLNYQRQLDAIIALAGETGLKSWQQCDAAIVRSF 61
           ALS D   V +FL  +  ER L+  T+ +Y+  L  ++    +   +       A ++ +
Sbjct: 4   ALSPDQGLVEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRL-DFISFAGLQEY 62

Query: 62  AVRSRRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDV 121
                 +   P S A  LSA+R  F +L  +     +P+  + +PK P  LPK++    V
Sbjct: 63  QSWLSEQNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQV 122

Query: 122 NRLLDI-DLNDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERR 180
             LL   D   PL +RD+AMLE++Y  GLR++ELV L ++++ L  G V VMGKG KER 
Sbjct: 123 EALLSAPDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERL 182

Query: 181 LPIGRNAVTWIEHWLDL-RGLFASDE--EALFLSKLGKRISARNVQKRFAEWGIKQGLN- 236
           +P+G NA+ WIE +L   R L   ++  + +F S  G++++ +    R   + +  G++ 
Sbjct: 183 VPMGENAIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDV 242

Query: 237 SHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRA 296
             + PH LRH+FATH+L    DLR VQ LLGH++LSTTQIYTH+  + L  +++  HPRA
Sbjct: 243 EKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQLHNEHHPRA 302