Pairwise Alignments

Query, 347 a.a., Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 318 a.a., Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) from Pseudomonas fluorescens FW300-N2E2

 Score = 70.9 bits (172), Expect = 4e-17
 Identities = 69/293 (23%), Positives = 129/293 (44%), Gaps = 12/293 (4%)

Query: 15  MIALLTAFGLASAAMTVQAAERIAFIPKLVGVGFFTSGGNGAQEAGK--ALGIDVTYDG- 71
           + A   A  L+SA        ++A + K +   FF +  +GA+   K  +   D+  +G 
Sbjct: 15  LAAASAALPLSSAFAQTAEKPKVALVMKSLANEFFLTMEDGAKAYQKEHSADFDLISNGI 74

Query: 72  PTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTKPE-C 130
             E   + Q+++V   +    DA+I++      + P +K+A+  G+ ++  D+   P   
Sbjct: 75  KDETDTANQIRIVEQMIVSKVDALIIAPADSKAMVPVIKKAVDAGITVINIDNQLDPAVV 134

Query: 131 RSYYIN---QGTPKQLGSMLV-EMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEAKAKIS 186
           +S  IN    G   + G+ LV E  A Q+ K   +V       T T  N   + A  K +
Sbjct: 135 KSKNINVPFVGPDNRKGARLVGEYLAKQL-KAGDEVGIIEGVSTTT--NAQARTAGFKDA 191

Query: 187 QEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIA-PDANALPAAAQAAENLKRN 245
            E    ++V+ Q G  +  K  Q A  ++  YP++ A++A  D+ A+ A +      K  
Sbjct: 192 MEAAQVKVVSLQSGDWEINKGNQVAASMLSEYPNIKALLAGNDSMAVGAVSAVRAAGKAG 251

Query: 246 NLAIVGFSTPNVMRPYVQRGTVKEFGLWDVVQQGKISVYVANALLKNMPMNVG 298
            + +VG+   N ++P ++ G V         +Q    +  A  +LK   ++ G
Sbjct: 252 KVQVVGYDNINAIKPMLKDGRVLATADQFAAKQAVFGIETALKILKGEKVDSG 304