Pairwise Alignments

Query, 347 a.a., Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 329 a.a., periplasmic binding ABC transporter protein from Sinorhizobium meliloti 1021

 Score =  190 bits (483), Expect = 4e-53
 Identities = 106/307 (34%), Positives = 174/307 (56%), Gaps = 5/307 (1%)

Query: 13  IKMIALLTAFGLASAAMTVQAA-ERIAFIPKLVGVGFFTSGGNGAQEAGKALG-IDVTYD 70
           +K + +  A  +A  A    A  ++IA + K +G+GFF +   GAQEA K LG +++ Y 
Sbjct: 4   LKSLMVTAAVAVALMANAAHAENKKIALVVKALGIGFFEAANKGAQEAAKELGDVEIIYT 63

Query: 71  GPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTKPEC 130
           GPT  +  GQ++++N+ + Q  DAI VSA   D L PALK+AM RG+K+++WDS    E 
Sbjct: 64  GPTSTTAEGQIEVINSLIAQKVDAIAVSANDTDALVPALKKAMDRGIKVISWDSGVAKEG 123

Query: 131 RSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHP 190
           R  ++N  +   +G+M++++AA  +  E   VA   +S T T+QN W+ E K K+   + 
Sbjct: 124 RLMHLNPSSSPLIGNMIIKLAADNL-PEGGDVAVLSASATATNQNTWIAEMK-KVQGNYK 181

Query: 191 GWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENL-KRNNLAI 249
           G  +V T +G + A KS +  +G+I+++P+L AIIAP +  + AAAQA  +  K   + +
Sbjct: 182 GINVVATVYGDDLADKSYRETQGLIQSHPNLKAIIAPTSVGIVAAAQAVTDAGKIGQINV 241

Query: 250 VGFSTPNVMRPYVQRGTVKEFGLWDVVQQGKISVYVANALLKNMPMNVGDSLDIPGIGKV 309
            G   P+ M  +V+ G  K F +W+ +  G  +  +A  L+       G  L +  +G V
Sbjct: 242 TGLGLPSEMAGHVKSGASKSFAIWNPIDLGYSATMIAYDLINGAEAKPGAELKMGRMGTV 301

Query: 310 TVSPNSE 316
            +  N+E
Sbjct: 302 KLDENNE 308