Pairwise Alignments

Query, 347 a.a., Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 330 a.a., sugar ABC transporter substrate-binding protein from Sinorhizobium meliloti 1021

 Score = 94.7 bits (234), Expect = 3e-24
 Identities = 80/334 (23%), Positives = 153/334 (45%), Gaps = 20/334 (5%)

Query: 14  KMIALLTAFGLASAAMTVQAAE---RIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYD 70
           K++A   A  L+ A     AA+   ++  + K+ G+ +F +   G +E G+ LG+D    
Sbjct: 4   KILAAALAASLSLAGAYTAAAQDTGKVGVVVKIGGIPWFNAMEAGIKERGEKLGVDAFMV 63

Query: 71  GPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTKPEC 130
           GPT    + QV+ + + + Q    I V       L P L +A ++G+ ++T +S ++ + 
Sbjct: 64  GPTSADPALQVRAIEDLIAQNVKVIGVVPNDAKVLEPVLTKAREKGIIVITHESPSQ-KG 122

Query: 131 RSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHP 190
             +     +    G    ++ A ++   K + A F  S TV   N W   A   I + HP
Sbjct: 123 ADWDFELASATGFGEAHAKLLAEKMG-GKGEYAVFVGSLTVPLHNAWADAAIEYIKKNHP 181

Query: 191 GWEIVTTQFGY-NDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLKR-NNLA 248
              +V  ++G   D  KS  TA  +I A+PDL   +A  +     A +A E  ++   + 
Sbjct: 182 EMTLVGDRYGVAEDVDKSRSTALDLISAHPDLKGFLAFGSQGPIGAGRAIEERRKVGEIF 241

Query: 249 IVGFSTPNVMRPYVQRGTVKEFGLWDVVQQGKISVYVANALLKNMPMNVGDSLDIPGIGK 308
           ++G  +P   +  ++   +    +W+  Q G++ V +A  L+K   +  G+  +I G+G 
Sbjct: 242 VLGPFSPGQGQKLIKSDAISGGFMWNPKQAGEVFVTLAAKLMKGEEIKDGE--EIEGLG- 298

Query: 309 VTVSPNSEQGYHYEAKGNGIVLLPERVIFNKDNI 342
             + P+ E         N  +++ + V  NK+ +
Sbjct: 299 -VIHPDFE---------NRNIIVDQLVPINKETV 322