Pairwise Alignments

Query, 347 a.a., Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 333 a.a., sugar ABC transporter substrate-binding protein from Sinorhizobium meliloti 1021

 Score =  106 bits (265), Expect = 7e-28
 Identities = 89/340 (26%), Positives = 151/340 (44%), Gaps = 18/340 (5%)

Query: 14  KMIALLTAFGLASAAM--TVQAAERIAFIPKLVGVGFFTSGGNGAQEAGKAL-GIDVTYD 70
           K+ A   A G   AA     Q A  +  + K+ G  +FT    G    GK    +  +  
Sbjct: 6   KIAACTVALGALCAAQLAVAQDAPSVVTVVKVTGENWFTRMEEGVVAYGKDNPAVSTSQI 65

Query: 71  GPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTKPEC 130
           GP +   + Q++L+ + V +  +AI V  + P  L    KRAM RG+KI+T ++D+    
Sbjct: 66  GPAKADAAQQLRLIEDLVAKNVNAIAVVPMDPSALEGVFKRAMNRGIKIITHEADSLKNT 125

Query: 131 RSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHP 190
           +   I     K  G+   E  A  + K     +F  S  ++T   QW  +  A+ ++++P
Sbjct: 126 Q-VDIEAFDNKVFGARFNEKLAECMGKSGKWTSFVGSLGSLT-HVQWA-DGGAENAKKYP 182

Query: 191 GWEIVTTQ-FGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLKR-NNLA 248
             E+V+ +   +NDA K+ + A  I++ YPD+       A  +    +A E       + 
Sbjct: 183 EMELVSEKNESFNDANKAYEKAREILRKYPDIKGFQGGSAIDVIGIGRAVEEAGLVGKVC 242

Query: 249 IVGFSTPNVMRPYVQRGTVKEFGLWDVVQQGKISVYVANALLKNMPMNVGDSLDIPGIGK 308
           +VG   P     Y++ G V+    WD    G +   VA  +++   +  G  L +PG  K
Sbjct: 243 VVGLGLPKDTAKYLESGAVQSISFWDPKDAGYVMNKVAQLVIEGKEITDGMDLGVPGYNK 302

Query: 309 VTVSPNSEQGYHYEAKGNGIVLLPER-VIFNKDNIDKYDF 347
           V+V             G+GI+++ E  V  +K N  +Y F
Sbjct: 303 VSVK---------NGPGDGIIVVGEAWVDVDKSNYSQYPF 333