Pairwise Alignments

Query, 347 a.a., Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 330 a.a., rhamnose ABC transporter substrate-binding protein from Rahnella sp. WP5

 Score =  191 bits (485), Expect = 2e-53
 Identities = 116/341 (34%), Positives = 187/341 (54%), Gaps = 23/341 (6%)

Query: 10  RHSIKMIALLTAFGLASAAMTVQAAERIAFIPKLVGVGFFTSGGNGAQEAGKALG-IDVT 68
           +H + +  + ++  LA AA    A  +IA + K +G GFF +   GAQ+A K LG + V 
Sbjct: 4   KHVLSLTLMASSILLAGAA---SAEVKIALVAKSLGNGFFEAANVGAQQAAKELGDVKVI 60

Query: 69  YDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTKP 128
           Y GPT  +   Q++++N  + QG DAI VSA  PD L P LK+AMQRG+K+++WDS    
Sbjct: 61  YTGPTTTTAEAQIEVLNGLIAQGVDAIAVSANDPDALVPVLKKAMQRGIKVVSWDSGVAK 120

Query: 129 ECRSYYINQGTPKQLGSMLVEMAA---HQVDKEKAKVAFFYSSPTVTDQNQWVKEAKAKI 185
           E R  ++N      +G   V++AA     ++ EK  VA   ++PT T+QN W+ E K K+
Sbjct: 121 EGRQIHLNPSNNALIGETNVKLAADALKALNVEKGDVAILSATPTSTNQNLWIAEMK-KV 179

Query: 186 SQEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENL-KR 244
             ++P   +VT  +G + + KS +   G++K+YPDL  II+P +  + AAAQA ++  K 
Sbjct: 180 LPKYPSVNLVTVAYGDDLSDKSYRETIGLLKSYPDLKVIISPSSVGIVAAAQAVKDQGKI 239

Query: 245 NNLAIVGFSTPNVMRPYVQRGTVKEFGLWDVVQQGKISVYVANALLKNMPMNVGDSLDIP 304
             + + G   P+ M   V+ G  K F +W+ +  G  + Y+A+ L+K        S+   
Sbjct: 240 GKVYVTGLGLPSEMAGAVKSGATKSFAIWNPIDLGYAATYLADDLVKGTATKTEASMG-- 297

Query: 305 GIGKVTVSPNSEQGYHYEAKGNGIVLLPERVIFNKDNIDKY 345
            +GKV +          +A G+G   + E  +++  NIDK+
Sbjct: 298 RLGKVKL----------DADGSG--AMAEPFVYDASNIDKF 326