Pairwise Alignments

Query, 347 a.a., Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 316 a.a., substrate-binding domain-containing protein from Pantoea sp. MT58

 Score = 75.9 bits (185), Expect = 1e-18
 Identities = 79/289 (27%), Positives = 125/289 (43%), Gaps = 11/289 (3%)

Query: 8   MARHSIKMIALLTAFGLASAAMT---VQAAERIAFIPKLVGVGFFTSGGNGAQEAGKALG 64
           MA ++ K+ A+  A GL SA       QAA   A +       FF     GAQEA KA G
Sbjct: 2   MAFNTRKLRAVALATGLLSAGSLFSLAQAASTYALVQINQQALFFNQMNKGAQEAAKASG 61

Query: 65  IDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDS 124
            ++      +  VS Q   + N++ QG   I+V A+  +G+ PA+K A    + ++  D+
Sbjct: 62  KNLVIFNANDNPVS-QNDAIENYIQQGVKGIMVDAIDVNGIMPAIKEAAAAKIPVIAIDA 120

Query: 125 --DTKPECRSYYI-NQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEA 181
                P+     + N    K +G   V+  A  +   KA++    +  +   QNQ  K  
Sbjct: 121 VLPAGPQAAQVGVDNLEGGKIIGKYFVDYVAKDMG-GKARLGIVGALNSAV-QNQRQKGF 178

Query: 182 KAKISQEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAEN 241
           +  I + +PG  +     G N    ++  AE +I   PDL AI A    AL  A  A EN
Sbjct: 179 EETI-KSNPGITVADVVDGQNVQDTAMTAAENLITGNPDLTAIYATGEPALLGAIAAVEN 237

Query: 242 L-KRNNLAIVGFSTPNVMRPYVQRGTVKEFGLWDVVQQGKISVYVANAL 289
             ++  + + G+   +     +  G V      D  + G+ +V   NAL
Sbjct: 238 QGRQKEIKVFGWDLTSKAISGIDGGYVTAVLQQDPKKMGEEAVKALNAL 286