Pairwise Alignments

Query, 347 a.a., Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 328 a.a., rhamnose ABC transporter substrate-binding protein from Klebsiella michiganensis M5al

 Score =  189 bits (479), Expect = 1e-52
 Identities = 109/334 (32%), Positives = 185/334 (55%), Gaps = 20/334 (5%)

Query: 17  ALLTAFGLASAAMTVQAAERIAFIPKLVGVGFFTSGGNGAQEAGKALG-IDVTYDGPTEP 75
           +L+    + + + +  A  +IA + K +G GFF +   GAQEA K LG + V Y GPT  
Sbjct: 6   SLILTVAILALSGSALAEVKIALVAKSLGNGFFEAANVGAQEAAKELGDVKVIYTGPTTT 65

Query: 76  SVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTKPECRSYYI 135
           +   Q++++N  + QG DAI +SA  PD + P LK+AMQRG+K+++WDS   P  R  ++
Sbjct: 66  TAEAQIEVLNGLIAQGVDAIAISANDPDAVVPVLKKAMQRGIKVVSWDSGVAPAGRQIHL 125

Query: 136 NQGTPKQLGSMLVEMAA---HQVDKEKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHPGW 192
           N      +G   V++AA     ++ EK  VA   ++PT T+QN W++E K K+  ++P  
Sbjct: 126 NPSNNALIGETNVKLAADALKALNVEKGDVAILSATPTSTNQNIWIEEMK-KVLPQYPSV 184

Query: 193 EIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENL-KRNNLAIVG 251
            +VT  +G + + KS + A G++K+YPDL  I++P +  + AAAQA ++  K   + + G
Sbjct: 185 NLVTVAYGDDLSDKSYREAVGLLKSYPDLKVIVSPSSVGIVAAAQAVKDQGKIGKVYVTG 244

Query: 252 FSTPNVMRPYVQRGTVKEFGLWDVVQQGKISVYVANALLKNMPMNVGDSLDIPGIGKVTV 311
              P+ M   ++ G  K F +W+ +  G  + Y+A+ L+K          ++  +GKV +
Sbjct: 245 LGLPSEMAGAIKSGASKSFAIWNPIDLGYAATYLADDLVKGTATKT--EANMGKLGKVKL 302

Query: 312 SPNSEQGYHYEAKGNGIVLLPERVIFNKDNIDKY 345
                     +A G+G   + E  +++  NIDK+
Sbjct: 303 ----------DADGSG--AMAEPFVYDASNIDKF 324