Pairwise Alignments

Query, 347 a.a., Autoinducer 2 (AI-2) ABC transport system, periplasmic AI-2 binding protein LsrB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 325 a.a., ABC transporter substrate-binding protein from Herbaspirillum seropedicae SmR1

 Score =  166 bits (420), Expect = 8e-46
 Identities = 107/331 (32%), Positives = 177/331 (53%), Gaps = 20/331 (6%)

Query: 21  AFGLASAAMTVQAAE--RIAFIPKLVGVGFFTSGGNGAQEAGKALG-IDVTYDGPTEPSV 77
           A GL +AA    AAE  RIA + K +G GFF +   GA+EA + LG ++V Y GPT P+ 
Sbjct: 5   AIGLIAAA-PAHAAEKVRIAMVVKSLGNGFFDAAHEGAKEAARELGDVEVIYTGPTTPTA 63

Query: 78  SGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTKPECRSYYINQ 137
            GQ+++VN+ ++Q  DAI++SA   + L P  KRAMQRGVK+L++DS      R   +N 
Sbjct: 64  EGQIEIVNSLISQKVDAIVISANDANALVPITKRAMQRGVKVLSFDSGIAKGGRLMQLNP 123

Query: 138 GTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEAKAKISQ-EHPGWEIVT 196
              + +G   ++MAA  +      VA   ++   T+QN W+ E K  +++ E    ++V 
Sbjct: 124 SNAELIGLKQIQMAAEAIG-GAGDVAILSATAQATNQNIWIGEMKKALARPEFSRMKLVA 182

Query: 197 TQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLKR-NNLAIVGFSTP 255
           T +G + + KS + A G+++++P L AIIAP    + AA +A  + K    + + G   P
Sbjct: 183 TVYGDDQSDKSYREAIGLLRSHPGLKAIIAPTTVGINAAGKAVVDEKLVGKVYVTGLGLP 242

Query: 256 NVMRPYVQRGTVKEFGLWDVVQQGKISVYVANALLKNMPM-NVGDSLDIPGIGKVTVSPN 314
           + M  +V+ G VK F +W+ +  G  + Y A   +K       G+S+ +  +G + +   
Sbjct: 243 SEMAGHVKSGAVKSFAIWNPIDLGYAATYAAYQFVKGKAQGKEGESIAVGRMGSIKL--- 299

Query: 315 SEQGYHYEAKGNGIVLLPERVIFNKDNIDKY 345
                  +A G   +  P    ++  N+DK+
Sbjct: 300 -------DAAGEAALAPP--FTYDASNVDKF 321